Job Description P39389 Confidence 99.88% Date Thu Jan 5 12:00:20 GMT 2012 Rank 166 Aligned Residues 314 % Identity 17% Template c1ibjC_ PDB info PDB header:lyase Chain: C: PDB Molecule:cystathionine beta-lyase; PDBTitle: crystal structure of cystathionine beta-lyase from arabidopsis2 thaliana Resolution 2.30 Å

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		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	E	A	P	S	L	K	P	L	W	R	E	L	S	R	V	V	Q	H	N	L	Q	T	V	L	G	Y	D	L	L	A	G	Q	R	V	L	R	E	Q	I	A	R	L	M	L	D	S	G	S	V	V	T	A	D	D	I	I	I	T	S	G	C	H	N	S	M	S	L	A	L	M	A	V	C	K	P	G	D	I
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.																			.
Template Conservation																																																.	.	.	.	.	.	.																			.
Template Sequence		D	A	M	S	T	P	L	Y	Q	T	A	T	F	K	Q	P	S	A	I	E	N	G	P	Y	D	Y	T	R	S	G	N	P	T	R	D	A	L	E	S	L	L	A	K	L	D	K	.	.	.	.	.	.	.	A	D	R	A	F	C	F	T	S	G	M	A	A	L	S	A	V	T	.	H	L	I	K	N	G	E	E
Template Known Secondary structure				S	S							S	B				S	S	S	S				S		S	B	T	T	T																	T	.	.	.	.	.	.	.		S						S	S										.	T	T	S		T	T
Template Predicted Secondary structure																																																.	.	.	.	.	.	.																			.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.
		195	.	.	.	.	200	.	.	.	.					.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure												.	.	.	.
Query SS confidence												.	.	.	.
Query Sequence		V	A	V	E	S	P	C	Y	Y	G	.	.	.	.	S	M	Q	M	L	R	G	M	G	V	K	V	I	E	I	P	T	D	P	E	T	G	I	S	V	E	A	L	E	L	A	L	E	Q	W	P	I	K	G	I	I	L	V	P	N	C	N	N	P	L	G	F	I	M	P	D	A	R	K	R	A	V	L	S	L	A
Query Conservation												.	.	.	.
Alig confidence												.	.	.	.																			.	.	.	.	.																							.	.									.	.	.
Template Conservation																																		.	.	.	.	.																							.	.									.	.	.
Template Sequence		I	V	A	G	D	D	V	Y	G	G	S	D	R	L	L	S	Q	V	V	P	R	S	G	V	V	V	K	R	V	N	T	T	.	.	.	.	.	K	L	D	E	V	A	A	A	I	G	P	Q	T	K	L	V	W	L	E	S	P	T	.	.	N	P	R	Q	Q	I	S	D	.	.	.	I	R	K	I	S	E	M	A
Template Known Secondary structure						T	T												T	G	G	G	G	T								T	T	.	.	.	.	.											T	T								S	S		.	.	T	T	T						.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.																							.	.									.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.						.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.			.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.			.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		Q	R	H	D	I	V	I	F	E	D	D	V	Y	G	E	L	A	T	E	Y	P	R	P	R	T	I	H	S	W	D	I	D	G	R	V	L	L	C	S	S	F	S	K	S	I	A	P	G	L	R	V	G	W	V	A	.	.	P	G	R	Y	H	D	K	L	M	H	M	K	Y	A	I	S	S	F	N	V	P	S	T
Query Conservation																																																									.	.
Alig confidence															.	.	.	.	.	.																																					.	.
Template Conservation															.	.	.	.	.	.
Template Sequence		H	A	Q	G	A	L	V	L	V	D	N	S	I	.	.	.	.	.	.	M	S	P	V	L	S	R	P	L	E	L	G	A	D	I	V	M	H	S	A	T	K	F	I	A	G	H	S	D	V	M	A	G	V	L	A	V	K	G	E	K	L	A	K	E	V	Y	F	L	Q	N	S	E	G	S	G	L	A	P	F	D
Template Known Secondary structure			T	T	T								T	T	.	.	.	.	.	.	T		T	T	T			G	G	G	G	T		S						T	T	T	T	T	T		S	S										S	S														T	T		B
Template Predicted Secondary structure															.	.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.							.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.																		.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	M	A	A	A	T	F	V	L	E	G	H	Y	H	R	H	I	R	R	M	R	Q	I	Y	Q	R	N	L	A	L	Y	T	C	W	I	R	E	Y	F	P	C	E	I	C	I	T	R	P	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	L	L	W	I	E	L	P	E	Q	V	D
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																							.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.																							.	.
Template Sequence		C	W	L	C	L	R	G	I	K	T	.	.	.	.	.	.	M	A	L	R	I	E	K	Q	Q	E	N	A	R	K	I	A	M	Y	L	S	S	H	.	.	P	R	V	K	K	V	Y	Y	A	G	L	P	D	H	P	G	H	H	L	H	F	S	Q	A	K	G	A	G	S	V	F	S	F	I	T	G	S	V	A	L
Template Known Secondary structure										T	T	.	.	.	.	.	.																					T		.	.	T	T							T	T	S	T	T		T	T					T	T	S		S				S							S
Template Predicted Secondary structure												.	.	.	.	.	.																							.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.							.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.																				.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	V	C	V	A	R	Q	L	C	R	M	K	I	Q	V	A	A	G	S	I	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	G	K	Y	R	N	C	L	R	I	N	C	A	L	P	L	S	E	T	Y	R	E	A	L	K	Q
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	K	H	L	V	E	T	T	K	Y	F	S	I	A	V	S	F	G	S	V	K	S	L	I	S	M	P	C	F	M	S	H	A	S	I	P	A	E	V	R	E	A	R	G	L	T	E	D	L	V	R	I	S	A	G	I	E	D	V	D	D	L	I	S	D	L	D	I
Template Known Secondary structure										S	S	S				S				S	S	S						T	T	T	T	T	T	T	T			S	S	T	T	T	T	S	S			T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions