Return to main results Retrieve Phyre Job Id

Job DescriptionQ9JMR2
Confidence1.22%DateThu Jan 5 12:37:46 GMT 2012
Rank18Aligned Residues8
% Identity63%Templatec1ce4A_
PDB info PDB header:viral proteinChain: A: PDB Molecule:protein (v3 loop of hiv-1 envelope protein); PDBTitle: conformational model for the consensus v3 loop of the2 envelope protein gp120 of hiv-1
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   68.70.....
Predicted Secondary structure 
Query SS confidence 







Query Sequence  GDARKRHC
Query Conservation 




 
 
Alig confidence 







Template Conservation 





 
Template Sequence  GDIRQAHC
Template Known Secondary structure  T

Template Predicted Secondary structure 





Template SS confidence 







   28.30.....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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