Return to main results Retrieve Phyre Job Id

Job DescriptionP58034
Confidence2.27%DateThu Jan 5 12:06:32 GMT 2012
Rank46Aligned Residues8
% Identity50%Templated1vpua_
SCOP infoHIV-1 VPU cytoplasmic domain HIV-1 VPU cytoplasmic domain HIV-1 VPU cytoplasmic domain
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   57..60....
Predicted Secondary structure 
Query SS confidence 







Query Sequence  LVNRLRER
Query Conservation 





  
Alig confidence 







Template Conservation 

 




Template Sequence  LIDRITER
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 







   42.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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