Return to main results Retrieve Phyre Job Id

Job DescriptionP60390
Confidence96.50%DateThu Jan 5 12:06:45 GMT 2012
Rank298Aligned Residues106
% Identity9%Templatec3khkA_
PDB info PDB header:dna binding proteinChain: A: PDB Molecule:type i restriction-modification system PDBTitle: crystal structure of type-i restriction-modification system2 methylation subunit (mm_0429) from methanosarchina mazei.
Resolution2.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40......... 50.........60.........70...
Predicted Secondary structure 

















..............





Query SS confidence 









































. . . . . . . . . . . . . .























Query Sequence  TTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEG. . . . . . . . . . . . . . RLLAIDRDPQAIAVAKTIDDPRFS
Query Conservation   



 


  
   

  


 
 
 



 



   
 
.............. 




 
  

  

  
  

 
Alig confidence 









































..............























Template Conservation 

  
  


         
 






 

  
   
                   
 
 

      

  

 
   
Template Sequence  TPKSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI
Template Known Secondary structure 




SSS
TT
TS
GGG



TT
Template Predicted Secondary structure 































Template SS confidence 















































































   228.230.........240.........250.........260.........270.........280.........290.........300.......
 
   74.....80.........90.........100.........110...
Predicted Secondary structure 






















Query SS confidence 







































Query Sequence  IIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAE
Query Conservation   
   
  
   
     
  




 





 


   
Alig confidence 







































Template Conservation       
   
 
         

 

 



         
Template Sequence  DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEK
Template Known Secondary structure 

B

SSS

TTTS
S
TT




SS

S


GG
Template Predicted Secondary structure 




























Template SS confidence 







































   308.310.........320.........330.........340.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions