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Job DescriptionP60390
Confidence99.48%DateThu Jan 5 12:06:45 GMT 2012
Rank12Aligned Residues147
% Identity22%Templatec2frxD_
PDB info PDB header:transferaseChain: D: PDB Molecule:hypothetical protein yebu; PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15.... 20.........30.........40.........50.........60......... 70.........80........
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Query Sequence  AVNGL. . NIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDD. . . . PRFSIIHGPFSALGEYVAE
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Template Sequence  PVAALFADGNAPQRVXDVAAAPGSKTTQISARXNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPE
Template Known Secondary structure  TTT


SSS
TTSTTT
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   107..110.........120.........130.........140.........150.........160.........170.........180......
 
   8990.........100.........110.........120.........130.........140.........150.........160........
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Query Sequence  RDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAI
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Template Sequence  . . . . . XFDAILLDAPCSGEGV. . . . . . . . VRKDPDALKNWSPES. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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GGG........GGT
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   187..190.........200.. .......210.......
 
   169170.........180.........190.........200.........210.........220.........230....... ..240......
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Query Sequence  VERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLS. . IISFHSLED
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . NQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEEN
Template Known Secondary structure  ...........................................TS

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   218.220.........230.........240.........250....
 
   247..250...
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Query Sequence  RIVKRFM
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Template Sequence  EAVCLWL
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   255....260.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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