Job Description P09836 Confidence 100.00% Date Thu Jan 5 11:02:32 GMT 2012 Rank 3 Aligned Residues 404 % Identity 11% Template d1pv7a_ SCOP info MFS general substrate transporter MFS general substrate transporter LacY-like proton/sugar symporter Resolution 3.60

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		R	Y	W	R	R	H	I	L	L	T	I	W	L	G	Y	A	L	F	Y	F	T	R	K	S	F	N	A	A	V	P	E	.	I	L	A	N	G	V	L	S	R	S	D	I	G	L	L	A	T	L	F	Y	I	T	Y	G	V	S	K	F	V	S	G	I	V	S	D	R	S	N	A	R	Y	F	M	G	I	G	L	I
Query Conservation																																	.
Alig confidence																																	.
Template Conservation
Template Sequence		Y	Y	L	K	N	T	N	F	W	M	F	G	L	F	F	F	F	Y	F	F	I	M	G	A	Y	F	P	F	F	P	I	W	L	H	D	I	N	H	I	S	K	S	D	T	G	I	I	F	A	A	I	S	L	F	S	L	L	F	Q	P	L	F	G	L	L	S	D	K	L	G	L	R	K	Y	L	L	W	I	I	T
Template Known Secondary structure						S																																																					T												T	T		T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	G	I	I	N	I	L	F	G	F	S	T	S	L	W	A	F	A	V	L	W	V	L	N	A	F	F	Q	G	W	G	S	P	V	C	A	R	L	L	T	A	W	Y	S	R	T	E	R	G	G	W	W	A	L	W	N	T	A	H	N	V	G	G	A	L	I	P	I	V	M	A	A	A	A	L	H	Y	G	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	M	L	V	M	F	A	P	F	F	I	F	I	F	G	P	L	L	Q	Y	N	I	L	V	G	S	I	V	G	G	I	Y	L	G	F	C	F	N	A	G	A	P	A	V	E	A	F	I	E	K	V	S	R	R	S	N	F	E	F	G	R	A	R	M	F	G	C	V	G	W	A	L	G	A	S	I	V	G	I	M
Template Known Secondary structure						T								T							T	T								T	T	T	T	G	G	G	G	G	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	G	M	M	I	A	G	C	M	A	I	V	V	G	I	F	L	C	W	R	L	R	D	R	P	Q	A	L	G	L	P	A	V	G	E	W	R	H	D	A	L	E	I	A	Q	Q	Q	E	G	A	G	L	T	R	K	E	I	L	T	K	Y	V	L	L	N	P	Y	I	W	L	L	S	F	C	Y	V	L	V	Y
Query Conservation
Alig confidence																								.	.	.	.	.
Template Conservation																								.	.	.	.	.
Template Sequence		F	T	I	N	N	Q	F	V	F	W	L	G	S	G	C	A	L	I	L	A	V	L	.	.	.	.	.	L	F	F	A	K	T	D	A	P	S	S	A	T	V	A	N	A	V	G	A	N	H	S	A	F	S	L	K	L	A	L	E	L	F	R	Q	P	K	L	W	F	L	S	L	Y	V	I	G	V	S	C	T	Y
Template Known Secondary structure																								.	.	.	.	.			S	S				S		S	S	S		S	S					S														T	T	S	S
Template Predicted Secondary structure																								.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.						.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	R	A	A	I	N	D	W	G	N	L	Y	M	S	E	T	L	G	V	D	L	V	T	A	N	T	A	V	T	M	F	E	L	G	G	F	I	G	A	L	V	A	G	W	G	S	D	K	L	F	N	G	N	R	G	P	M	N	L	I	F	A	A	G	I	L	L	S	V	G	S	L	W	L	M	P	F	A	S
Query Conservation
Alig confidence																																																								.	.	.	.	.
Template Conservation																																																								.	.	.	.	.
Template Sequence		D	V	F	D	Q	Q	F	A	N	F	F	T	S	F	F	A	T	G	E	Q	G	T	R	V	F	G	Y	V	T	T	M	G	E	L	L	N	A	S	I	M	F	F	A	P	L	I	I	N	R	I	G	G	K	N	.	.	.	.	.	A	L	L	L	A	G	T	I	M	S	V	R	I	I	G	S	S	F	A	T	S
Template Known Secondary structure													T	T	S	S	S																									T	T													.	.	.	.	.																		T
Template Predicted Secondary structure																																																								.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290						.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		Y	V	M	Q	A	T	C	F	F	T	I	G	F	F	V	F	G	P	Q	M	L	I	G	M	A	A	A	E	C	S	H	K	E	A	A	G	A	A	T	G	F	V	G	L	F	A	Y	.	L	G	A	S	L	A	G	W	P	L	A	K	V	L	D	T	W	H	W	S	G	F	F	V	V	I	S	I	A	A	G	I
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		A	L	E	V	V	I	L	K	T	L	H	M	F	E	V	P	F	L	L	V	G	C	F	K	Y	I	T	S	Q	F	E	V	R	F	S	A	T	I	Y	L	V	C	F	C	F	F	K	Q	L	A	M	I	F	M	S	V	L	A	G	N	M	Y	E	S	I	G	F	Q	G	A	Y	L	V	L	G	L	V	A	L	G
Template Known Secondary structure																															S		G	G	G										T	T	T
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	L	L	L	L	P	F	L	N	A	Q	T	P	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	T	L	I	S	V	F	T	L	S	G	P	G	P	L	S
Template Known Secondary structure										S			S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions