Job Description P09836 Confidence 0.98% Date Thu Jan 5 11:02:32 GMT 2012 Rank 72 Aligned Residues 406 % Identity 12% Template c3mkuA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter Resolution 4.20 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.																										.	.	.	.	.	.
Query SS confidence																																																		.																										.	.	.	.	.	.
Query Sequence		K	Y	E	I	D	A	R	Y	R	Y	W	R	R	H	I	L	L	T	I	W	L	G	Y	A	L	F	Y	F	T	R	K	S	F	N	A	A	V	P	E	I	L	A	N	G	V	L	S	R	.	S	D	I	G	L	L	A	T	L	F	Y	I	T	Y	G	V	S	K	F	V	S	G	I	V	S	.	.	.	.	.	.
Query Conservation																																																		.																										.	.	.	.	.	.
Alig confidence															.	.																																		.																										.	.	.	.	.	.
Template Conservation															.	.
Template Sequence		E	N	S	V	H	R	Y	K	K	E	A	S	N	.	.	L	I	K	L	A	T	P	V	L	I	A	S	V	A	Q	T	G	M	G	F	V	D	T	I	M	A	G	G	V	S	A	I	D	M	A	A	V	S	I	A	A	S	I	W	L	P	S	I	L	F	G	V	G	L	L	M	A	L	V	P	V	V	A	Q	L
Template Known Secondary structure			T	T											.	.																														T	T	T	T	T	T																								G	G	G		T	T	S
Template Predicted Secondary structure															.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.			.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.														.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure		.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	D	R	S	N	A	R	Y	F	M	G	I	G	L	I	A	T	G	I	I	N	I	L	F	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	S	L	W	A	F	A	V	L	W	V	L	N	A	F	F	Q	G	W	G	S	P	V	C	A	R	L	L	T	A	W	Y	S	R	T	E	R
Query Conservation		.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	G	A	G	R	Q	H	K	I	P	F	E	V	H	Q	G	L	I	L	A	L	L	V	S	V	P	I	I	A	V	L	F	Q	T	Q	F	I	I	R	F	M	D	V	E	E	A	M	A	T	K	T	V	G	Y	M	H	A	V	I	F	A	V	P	A	Y	L	L	F	Q	A	L	R	S	F	T	D	G	M	S	L
Template Known Secondary structure			S	S	S	S	S	S	S																															S	S		S	S	T	T																											T	T	T	T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	W	W	A	L	W	N	T	A	H	N	V	G	G	A	L	I	P	I	V	M	A	A	A	A	L	H	Y	G	W	R	A	G	M	M	I	A	G	C	M	A	I	V	V	G	I	F	L	C	W	R	L	R	D	R	P	Q	A	L	G	L	P	A	V	G	E	W	R	H	D	A	L	E	I	A	Q	Q	Q	E
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	K	P	A	M	V	I	G	F	I	G	L	L	L	N	I	P	L	N	W	I	F	V	Y	G	K	F	G	A	P	E	L	G	G	V	G	C	G	V	A	T	A	I	V	Y	W	I	M	L	L	L	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Y	I	V	T	S	K	R	L	A	H	V	K
Template Known Secondary structure																									T	T		S	S																										.	.	.	.	.	.	.	.	.	.	.	.	.	.					T		T	T
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.															.	.	.	.	.	.	.	220	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	G	L	T	R	K	E	I	L	T	K	Y	V	L	L	N	P	Y	I	W	L	L	S	F	C	Y	V	L	V	Y	V	V	R	A	A	I	N	D	W	G	N	L	Y	M	S	E	T	L	G	V	D	L	V	T	A	N	T	A	V	T	M	F	E	L	G	G	F	I	G	A	L	V	A	G	W	G	S	D	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F	E	T	F	H	K	P	Q	P	K	E	L	I	R	L	F	R	L	G	F	P	V	A	A	A	L	F	F	E	V	T	L	F	A	V	V	A	L	L	V	A	P	L	G	S	T	V	V	A	A	H	Q	V	A	L	N	F	S	S	L	V	F	M	F	P	M	S	I	G	A	A	V	S	I	R	V	G	H	K
Template Known Secondary structure								S	S	T	T	T	S	T	T	T	T																									T			S		S	T					T	T																											G
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		313	.	.	.	.	.	.	320	.	.																.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	F	N	G	N	R	G	P	M	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	F	A	A	G	I	L	L	S	V	G	S	L	W	L	M	P	F	A	S	Y	V	M	Q	A	T	C	F	F	T	I	G	F	F	V	F	G	P	Q	M	L	I	G	M	A	A	A	E	C	S	H	K	E	A
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	E	Q	D	T	K	G	A	A	I	A	A	N	V	G	L	M	T	G	L	A	T	A	C	I	T	A	L	L	T	V	L	F	R	E	Q	I	A	L	L	Y	T	E	N	Q	V	V	V	A	L	A	M	Q	L	L	L	F	A	A	I	Y	Q	C	M	D	A	V	Q	V	V	A	A	G	S	L	R	G	Y	K
Template Known Secondary structure		G	G	S	S				T	T	T	T																														T	S	S		S	S	T	T																													G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.						.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.
Query SS confidence																														.	.	.	.	.
Query Sequence		A	G	A	A	T	G	F	V	G	L	F	A	Y	L	G	A	S	L	A	G	W	P	L	A	K	V	L	D	.	.	.	.	.	T	W	H	W	S	G	F	F	V	V	I	S	I	A	A	G	I	S	A	L	L	L	L	P	F	L	N	A	Q	T	P	R	E
Query Conservation																														.	.	.	.	.
Alig confidence																														.	.	.	.	.
Template Conservation
Template Sequence		D	M	T	A	I	F	H	R	T	F	I	S	Y	W	V	L	G	L	P	T	G	Y	I	L	G	M	T	N	W	L	T	E	Q	P	L	G	A	K	G	F	W	L	G	F	I	I	G	L	S	A	A	A	L	M	L	G	Q	R	L	Y	W	L	Q	K	Q	S
Template Known Secondary structure		S																												S	S	S			S																					T	G	G	G	S	T	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.