Job Description P0AB71 Confidence 92.84% Date Thu Jan 5 11:14:46 GMT 2012 Rank 89 Aligned Residues 234 % Identity 12% Template c3thaB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: tryptophan synthase subunit alpha from campylobacter jejuni. Resolution 2.37 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																																																.
Query SS confidence																		.	.																																																.
Query Sequence		F	Q	V	A	K	E	N	N	F	A	L	P	A	V	N	C	.	.	V	G	T	D	S	I	N	A	V	L	E	T	A	A	K	V	K	A	P	V	I	V	Q	F	S	N	G	G	A	S	F	I	A	G	K	G	V	K	S	D	V	P	Q	G	A	A	I	.	L	G	A	I	S	G	A	H	H	V	H	Q	M	A
Query Conservation																		.	.																																																.
Alig confidence																		.	.																																																.
Template Conservation
Template Sequence		F	R	K	F	Y	K	E	N	A	N	V	A	Y	T	V	L	G	Y	P	N	L	Q	T	S	E	A	F	L	Q	R	L	D	Q	S	P	I	D	I	L	E	L	G	V	A	Y	S	D	P	I	A	D	G	E	I	I	A	D	A	A	K	I	A	L	D	Q	G	V	D	I	H	S	V	F	E	L	L	A	R	I	K
Template Known Secondary structure		G	G	G	S		S	S	S								T	T	S	S											T	G	G	G	S	S		S								S	S					S	S													T	T												T
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		E	H	Y	G	V	P	V	I	L	H	T	D	H	C	A	K	K	L	L	P	W	I	D	G	L	L	D	A	G	E	K	H	F	.	A	A	T	G	K	P	L	F	S	S	H	M	I	D	L	S	E	E	S	L	Q	E	N	I	E	I	C	S	K	Y	L	E	R	M	S	K	I	G	M	T	L	E	I	E	L	G
Query Conservation																																			.
Alig confidence			.	.													.	.	.	.	.	.	.	.	.										.														.	.							.	.	.	.																	.	.	.	.	.
Template Conservation			.	.													.	.	.	.	.	.	.	.	.																								.	.							.	.	.	.																	.	.	.	.	.
Template Sequence		T	.	.	K	K	A	L	V	F	X	V	Y	Y	N	L	.	.	.	.	.	.	.	.	.	I	F	S	Y	G	L	E	K	F	V	K	K	A	K	S	L	G	I	C	A	L	I	V	.	.	P	E	L	S	F	E	.	.	.	.	E	S	D	D	L	I	K	E	C	E	R	Y	N	I	A	L	.	.	.	.	.
Template Known Secondary structure			.	.	S	S											.	.	.	.	.	.	.	.	.																T	T							.	.	T	T			G	G	.	.	.	.	G												T				.	.	.	.	.
Template Predicted Secondary structure			.	.													.	.	.	.	.	.	.	.	.																								.	.							.	.	.	.																	.	.	.	.	.
Template SS confidence
		84			.	.	.	.	.	90	.	.	.	.	.	.										.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.					.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	T	G	G	E	E	D	G	V	D	N	S	H	M	D	A	S	A	L	Y	T	Q	P	E	D	V	D	Y	A	Y	T	E	L	S	K	I	S	P	R	F	T	I	A	A	S	F	G	N	V	H	G	V	Y	K	P	G	N	V	V	L	T	P	T	I	L	R	D	S	Q	E	Y	V	S	K	K	H	N	L	P	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																															.												.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																															.												.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	L	V	S	V	T	T	P	K	E	R	V	.	.	.	.	K	K	L	V	K	H	A	K	G	F	I	Y	L	L	A	S	I	G	I	T	G	T	K	S	V	E	E	A	I	L	.	Q	D	K	V	K	E	I	R	S	F	T	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.						T	T	S						.	.	.	.					T	T			S								S		S	S											.									T	T		.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.																															.												.	.	.	.	.	.	.	.
Template SS confidence
															142	.	.	.	.	.	.	.	150	.	.	.	.					.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.	.	.	.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.					.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.
Query SS confidence																																								.	.	.	.
Query Sequence		N	S	L	N	F	V	F	H	G	G	S	G	S	T	A	Q	E	I	K	D	S	V	S	Y	G	V	V	K	M	N	I	D	T	D	T	Q	W	A	.	.	.	.	T	W	E	G	V	L	N	Y	Y	K	A
Query Conservation																																								.	.	.	.
Alig confidence		.							.	.																														.	.	.	.
Template Conservation		.							.	.
Template Sequence		.	N	L	P	I	F	V	.	.	G	F	G	I	Q	N	N	Q	D	V	K	R	X	R	K	V	A	D	G	V	I	V	G	T	S	I	V	K	C	F	K	Q	G	N	L	D	I	I	X	K	D	I	E	E
Template Known Secondary structure		.		S					.	.		S	S			S	S							T	T	T	S	S												T	T	S	S
Template Predicted Secondary structure		.							.	.
Template SS confidence
			196	.	.	.	200	.			.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions