Job Description P0AB71 Confidence 45.18% Date Thu Jan 5 11:14:46 GMT 2012 Rank 241 Aligned Residues 232 % Identity 16% Template c3navB_ PDB info PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 Resolution 2.10 Å

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		16	.	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.				.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.			.	.	.	.	.	.
Predicted Secondary structure													.											.	.	.																																																.	.
Query SS confidence													.											.	.	.																																																.	.
Query Sequence		D	D	V	Q	K	V	F	Q	V	A	K	.	E	N	N	F	A	L	P	A	V	N	.	.	.	C	V	G	T	D	S	I	N	A	V	L	E	T	A	A	K	V	K	A	P	V	I	V	Q	F	S	N	G	G	A	S	F	I	A	G	K	G	V	K	S	D	V	P	Q	G	A	A	.	.	I	L	G	A	I	S
Query Conservation													.											.	.	.																																																.	.
Alig confidence													.											.	.	.																																																.	.
Template Conservation
Template Sequence		N	R	Y	Q	A	L	F	Q	R	L	S	A	A	Q	Q	G	A	F	V	P	F	V	T	I	G	D	P	N	P	E	Q	S	L	A	I	M	Q	T	L	I	D	A	G	A	D	A	L	E	L	G	M	P	F	S	D	P	L	A	D	G	P	T	I	Q	G	A	N	L	R	A	L	A	A	K	T	T	P	D	I	C
Template Known Secondary structure															T	B									T	T	S	S															T	T		S	S										T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		G	A	H	H	V	H	Q	M	A	E	H	Y	G	V	P	V	I	L	H	T	D	H	C	A	K	K	L	L	P	W	I	D	G	L	L	D	A	G	E	K	H	F	.	A	A	T	G	K	P	L	F	S	S	H	M	I	D	L	S	E	E	S	L	Q	E	N	I	E	I	C	S	K	Y	L	E	R	M	S	K	I
Query Conservation																																												.
Alig confidence																						.	.	.	.	.	.	.	.	.														.														.	.									.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.																												.	.									.	.	.	.
Template Sequence		F	E	L	I	A	Q	I	R	A	R	N	P	E	T	P	I	G	L	L	M	.	.	.	.	.	.	.	.	.	Y	A	N	L	V	Y	A	R	G	I	D	D	F	Y	Q	R	C	Q	K	A	G	V	D	S	V	L	I	.	.	A	D	V	P	T	N	E	S	.	.	.	.	Q	P	F	V	A	A	A	E	K	F
Template Known Secondary structure													T	T	S							.	.	.	.	.	.	.	.	.							T	T													T							.	.	T	T	S		G	G	G		.	.	.	.										T
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																												.	.									.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.										.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.					.	.	.	140	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	M	T	L	E	I	E	L	G	C	T	G	G	E	E	D	G	V	D	N	S	H	M	D	A	S	A	L	Y	T	Q	P	E	D	V	D	Y	A	Y	T	E	L	S	K	I	S	P	R	F	T	I	A	A	S	F	G	N	V	H	G	V	Y	K	P	G	N	V	V	L	T	P	T	I	L	R	D	S	Q	E	Y
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	I	Q	P	I	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	P	P	T	A	S	D	E	T	L	.	.	.	.	R	A	V	A	Q	L	G	K	G	Y	T	Y	L	L	S	R	A	P	V	H	.	.	.	.	.	.	.	.	.	.	.	.	A	L	L	E	R	L	Q	Q	F
Template Known Secondary structure		T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T			S				.	.	.	.									S												.	.	.	.	.	.	.	.	.	.	.	.									T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		147	.	.	150	.	.																			.	.	.	.	.	.	.	160	.	.	.					.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.													.	.	.	.	.	.	190	.	.
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.											.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	K	K	H	N	L	P	H	N	S	L	N	F	V	F	H	G	G	S	G	S	T	A	Q	E	I	K	D	S	V	S	Y	G	V	V	K	M	N	I	D	T	D	T	Q	W	A	.	.	.	.	.	.	.	.	.	.	T	W	E	G	V	L	N	Y	Y	K	A
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.							.																															.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.							.
Template Sequence		D	.	.	.	.	.	.	.	.	.	A	P	P	A	L	L	.	G	F	G	I	S	E	P	A	Q	V	K	Q	A	I	E	A	G	A	A	G	A	I	S	G	S	A	V	V	K	I	I	E	T	H	L	D	N	P	A	K	Q	L	T	E	L	A	N	F	T	Q	A
Template Known Secondary structure		T	.	.	.	.	.	.	.	.	.							.		S	S			S										T	T		S					S	S									T	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.							.
Template SS confidence
		204										.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions