Job Description P0AB71 Confidence 97.06% Date Thu Jan 5 11:14:46 GMT 2012 Rank 39 Aligned Residues 240 % Identity 8% Template c3fa4D_ PDB info PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form Resolution 2.18 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	V	I	T	G	D	D	V	Q	K	V	F	Q	V	A	K	E	N	N	F	A	L	P	A	V	N	C	V	G	T	D	S	I	N	A	V	L	E	T	A	A	K	V	K	A	P	V	I	V	Q	F	S	N	G	G	A	S	F	I	A	G	K	G	V	K	S	D	V	P	Q	G	A	A	I	L	G	A	I	S
Query Conservation
Alig confidence															.	.	.																				.	.	.	.																									.	.	.	.	.	.	.
Template Conservation															.	.	.																				.	.	.	.																									.	.	.	.	.	.	.
Template Sequence		P	M	V	T	A	A	T	S	L	R	R	A	L	.	.	.	E	N	P	D	S	F	I	V	A	P	G	V	Y	D	G	L	S	A	R	.	.	.	.	V	A	L	S	A	G	F	D	A	L	Y	M	T	G	A	G	T	A	A	S	V	H	G	Q	.	.	.	.	.	.	.	A	D	L	G	I	C	T	L	N	D
Template Known Secondary structure															.	.	.		S	T	T										S						.	.	.	.				T	T	T		S														T	S	S	.	.	.	.	.	.	.		S	S	S
Template Predicted Secondary structure															.	.	.																				.	.	.	.																									.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.								.	.	60	.	.	.	.	.	.	.
		90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.						.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure												.																																																	.	.	.	.	.
Query SS confidence												.																																																	.	.	.	.	.
Query Sequence		G	A	H	H	V	H	Q	M	A	E	.	H	Y	G	V	P	V	I	L	H	T	D	H	C	A	K	K	L	L	P	W	I	D	G	L	L	D	A	G	E	K	H	F	A	A	T	G	K	P	L	F	S	S	H	M	I	D	L	S	.	.	.	.	.	E	E	S	L	Q	E	N	I	E	I	C	S	K	Y	L	E
Query Conservation												.																																																	.	.	.	.	.
Alig confidence												.																								.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation																																				.	.	.	.	.	.	.	.
Template Sequence		M	R	A	N	A	E	M	I	S	N	I	S	P	S	T	P	V	I	A	D	A	D	T	G	Y	G	G	P	I	M	V	A	R	T	.	.	.	.	.	.	.	.	T	E	Q	Y	S	R	S	G	V	A	A	F	H	I	E	D	Q	V	Q	T	K	I	L	V	D	T	D	T	Y	V	T	R	I	R	A	A	V	Q
Template Known Secondary structure													S	T	T	S							T	T		S	S	S								.	.	.	.	.	.	.	.							T	T									B						B
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.									.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		164	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		R	M	S	.	.	K	I	G	M	T	L	E	I	E	L	G	C	T	G	G	E	E	D	G	V	D	N	S	H	M	D	A	S	A	L	Y	T	Q	P	E	D	V	D	Y	A	Y	T	E	L	S	K	I	S	P	R	F	T	I	A	A	S	F	G	N	V	H	G	V	Y	K	P	G	N	V	V	L	T	P	T	I
Query Conservation					.	.
Alig confidence					.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.												.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	R	Q	R	I	G	S	D	I	V	V	I	A	R	T	D	S	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	H	G	Y	E	E	S	V	A	R	L	R	A	A	R	D	A	.	G	A	D	V	G	F	L	E	G	I	T	.	.	.	.	.	.	.	.	.	.	.	.	S	R	E	M
Template Known Secondary structure							T														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	T		S					T	T			.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.												.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.																	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.		.	.	.	.	.	.	190	.	.	.	.													.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	D	S	Q	E	Y	V	S	K	K	H	N	L	P	H	N	S	L	N	F	V	F	H	G	G	S	G	S	T	A	Q	E	I	K	D	S	V	S	Y	G	V	V	K	M	N	I	D	T	D	T	Q	W	A	T	W	E	G	V	L	N	Y	Y	K	A
Query Conservation
Alig confidence											.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.
Template Sequence		A	R	Q	V	I	Q	D	L	A	.	.	.	.	.	.	G	W	P	L	L	L	N	M	V	E	H	G	A	T	P	S	I	S	A	A	E	A	K	E	M	G	F	R	I	I	I	F	P	F	A	A	L	G	P	A	V	A	A	M	R	E	A	M	E	K
Template Known Secondary structure									T	T	.	.	.	.	.	.	T	S		B						T	T	S	S	S												T		S					T	T	T	T
Template Predicted Secondary structure											.	.	.	.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.							.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions