Job Description P0AB71 Confidence 31.63% Date Thu Jan 5 11:14:46 GMT 2012 Rank 288 Aligned Residues 154 % Identity 12% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.												.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.																								.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.																								.
Query Sequence		P	V	I	L	H	T	D	H	C	A	K	K	L	L	P	W	I	D	G	L	L	D	A	G	E	K	H	F	A	A	T	G	K	P	L	F	S	S	H	M	I	.	.	.	.	.	.	.	.	.	.	.	D	L	S	E	E	S	L	Q	E	N	I	E	I	C	S	K	Y	L	E	R	M	S	K	.	I	G	M	T
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.																								.
Alig confidence																.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation																.	.	.	.	.	.	.	.	.	.
Template Sequence		P	I	A	L	Q	L	A	G	S	D	P	K	S	L	.	.	.	.	.	.	.	.	.	.	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P
Template Known Secondary structure		S								S						.	.	.	.	.	.	.	.	.	.										T	T		S										S							T		G	G	G	G	G	G														T	T		S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.											.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.					.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.
Query SS confidence																																																																.	.	.	.
Query Sequence		L	E	I	E	L	G	C	T	G	G	E	E	D	G	V	D	N	S	H	M	D	A	S	A	L	Y	T	Q	P	E	D	V	D	Y	A	Y	T	E	L	S	K	I	S	P	R	F	T	I	A	A	S	F	G	N	V	H	G	V	Y	K	P	G	.	.	.	.	N	V	V	L	T	P	T	I	L	R	D	S	Q	E
Query Conservation																																																																.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.													.	.	.	.																											.	.	.	.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Sequence		V	T	V	K	X	R	L	G	L	.	.	.	.	.	.	.	.	.	.	.	E	G	K	E	T	Y	R	G	L	A	Q	S	.	.	.	.	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G
Template Known Secondary structure								S		B	.	.	.	.	.	.	.	.	.	.	.	T	T											.	.	.	.							T	T									S		B		T	T	S		T	T	G	G	G	T	S	S
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
		129	130	.	.	.	.	.	.	.												.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	V	S	K	K	H	N	L	P	H	N	S	L	N	F	V	F	H	G	G	S	G	S	T	A	Q	E	I	K	D	S	V	S	Y	G	V	V	K	M	N	I	D	T	D	T
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.																					.	.
Template Conservation					.	.	.	.	.	.	.	.																					.	.
Template Sequence		D	F	P	.	.	.	.	.	.	.	.	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	.	.	K	R	V	D	G	V	X	L	G	R	A	V
Template Known Secondary structure				T	.	.	.	.	.	.	.	.	T	S						S	S			S									.	.	T	T	S	S					S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.																					.	.
Template SS confidence
		194	.	.									.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions