Job Description P0AB71 Confidence 30.24% Date Thu Jan 5 11:14:46 GMT 2012 Rank 294 Aligned Residues 118 % Identity 14% Template c2yxgD_ PDB info PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.						.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																						.	.	.	.	.
Query SS confidence																						.	.	.	.	.
Query Sequence		K	H	F	A	A	T	G	K	P	L	F	S	S	H	M	I	D	L	S	E	.	.	.	.	.	E	S	L	Q	E	N	I	E	I	C	S	K	Y	L	E	R	M	S	K	I	G	M	T	L	E	I	E	L	G	C	T	G	G	E	E	D	G	V	D	N	S	H	M	D	A	S	A	L	Y	T	Q	P	E	D	V
Query Conservation																						.	.	.	.	.
Alig confidence																						.	.	.	.	.																				.							.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.							.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	I	N	F	L	I	E	N	G	V	S	G	I	V	A	V	G	T	T	G	E	S	P	T	L	S	H	E	E	H	K	K	V	I	E	K	V	V	D	V	V	N	G	.	R	V	Q	V	I	A	.	.	G	A	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	C	T	E	E	A
Template Known Secondary structure										T	T		S					S	S	T	T	T	T	G	G	G	S																	T	T	.	S	S					.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																														.							.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.			.	.	.	.																		.	80	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.						.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.
Query Sequence		D	Y	A	Y	T	E	L	S	K	I	S	P	R	F	T	I	A	A	S	F	G	N	V	H	G	V	Y	K	P	G	N	V	V	L	T	P	T	I	L	R	D	S	Q	E	Y	V	S	K	K	H	N	L	P	H	N	S	L	N	F	V	F	H	.	.	.	.	.	G	G	S	G	S	T	A	Q	E	I	K	D	S
Query Conservation																																																																.	.	.	.	.
Alig confidence						.															.	.	.	.	.	.	.	.																							.	.	.	.	.									.	.	.	.	.
Template Conservation						.															.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Sequence		I	E	L	S	.	V	F	A	E	D	V	G	A	D	A	V	L	S	I	.	.	.	.	.	.	.	.	T	P	Y	Y	N	K	P	T	Q	E	G	L	R	K	H	F	G	K	V	A	E	S	.	.	.	.	.	I	N	L	P	I	V	L	Y	N	V	P	S	R	T	A	V	N	L	E	P	K	T	V	K	L	L
Template Known Secondary structure						.							T		S						.	.	.	.	.	.	.	.				S	S																		.	.	.	.	.		S	S												S
Template Predicted Secondary structure						.															.	.	.	.	.	.	.	.																							.	.	.	.	.
Template SS confidence
		85	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.									.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.						.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		279	280
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		151	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions