Job Description P0AB71 Confidence 59.21% Date Thu Jan 5 11:14:46 GMT 2012 Rank 196 Aligned Residues 232 % Identity 9% Template c2ekcA_ PDB info PDB header:lyase Chain: A: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: structural study of project id aq_1548 from aquifex aeolicus vf5 Resolution 2.00 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.							30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.																																																							.
Query SS confidence																.	.	.	.	.	.																																																							.
Query Sequence		D	D	V	Q	K	V	F	Q	V	A	K	E	N	N	.	.	.	.	.	.	F	A	L	P	A	V	N	C	V	G	T	D	S	I	N	A	V	L	E	T	A	A	K	V	K	A	P	V	I	V	Q	F	S	N	G	G	A	S	F	I	A	G	K	G	V	K	S	D	V	P	Q	G	A	A	.	I	L	G	A	I
Query Conservation																.	.	.	.	.	.																																																							.
Alig confidence																.	.	.	.	.	.							.	.																																															.
Template Conservation																												.	.
Template Sequence		G	R	I	S	D	K	F	T	E	L	K	E	K	R	E	K	A	L	V	S	Y	L	M	V	G	Y	.	.	P	D	Y	E	T	S	L	K	A	F	K	E	V	L	K	N	G	T	D	I	L	E	I	G	F	P	F	S	D	P	V	A	D	G	P	T	I	Q	V	A	H	E	V	A	L	K	N	G	I	R	F	E
Template Known Secondary structure															T	B									T	T	S	.	.	S															T	T		S									S			T	T	S														T	T
Template Predicted Secondary structure																												.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure															.																														.
Query SS confidence															.																														.
Query Sequence		S	G	A	H	H	V	H	Q	M	A	E	H	Y	.	G	V	P	V	I	L	H	T	D	H	C	A	K	K	L	L	P	W	I	D	G	L	L	D	A	G	E	K	H	.	F	A	A	T	G	K	P	L	F	S	S	H	M	I	D	L	S	E	E	S	L	Q	E	N	I	E	I	C	S	K	Y	L	E	R	M	S
Query Conservation															.																														.
Alig confidence															.													.	.	.	.	.	.	.	.	.									.															.	.									.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.																								.	.									.	.	.	.
Template Sequence		D	V	L	E	L	S	E	T	L	R	K	E	F	P	D	I	P	F	L	L	M	T	Y	Y	N	P	.	.	.	.	.	.	.	.	.	I	F	R	I	G	L	E	K	F	C	R	L	S	R	E	K	G	I	D	G	F	I	V	.	.	P	D	L	P	P	E	E	A	.	.	.	.	E	E	L	K	A	V	M	K
Template Known Secondary structure															T	T	S											.	.	.	.	.	.	.	.	.																T	T							.	.	T	T							.	.	.	.
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.																								.	.									.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.										.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.			.	130	.	.	.	.	.	.					.	.	.	140	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	G	M	T	L	E	I	E	L	G	C	T	G	G	E	E	D	G	V	D	N	S	H	M	D	A	S	A	L	Y	T	Q	P	E	D	V	D	Y	A	Y	T	E	L	S	K	I	S	P	R	F	T	I	A	A	S	F	G	N	V	H	G	V	Y	K	P	G	N	V	V	L	T	P	T	I	L	R	D	S	Q
Query Conservation
Alig confidence								.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Sequence		K	Y	V	L	S	F	.	.	.	V	P	L	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	S	T	R	K	R	I	.	.	.	.	K	L	I	C	E	A	A	D	E	M	T	Y	F	V	S	V	T	G	Y	E	R	.	.	.	.	.	.	.	.	.	I	K	K	K	V	E	E	Y	R
Template Known Secondary structure			T	T				.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							.	.	.	.								S	S						S	S						.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.																						.	.	.	.	.	.	.	.	.
Template SS confidence
		145	.	.	.	.	150				.	.	.	.	.																.	.	.	.	160	.	.	.					.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.										.	.	.	.	.	190	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Y	V	S	K	K	H	N	L	P	H	N	S	L	N	F	V	F	H	G	G	S	G	S	T	A	Q	E	I	K	D	S	V	S	Y	G	V	V	K	M	N	I	D	T	D	T	Q	W	A	T	W	E	G	V	L	N	Y	Y	K	A
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.															.					.
Template Conservation					.	.	.	.	.	.	.	.	.															.					.
Template Sequence		E	L	C	.	.	.	.	.	.	.	.	.	D	K	P	V	V	V	G	F	G	V	S	K	K	E	.	H	A	R	E	.	I	G	S	F	A	D	G	V	V	V	G	S	A	L	V	K	L	A	G	Q	K	K	I	E	D	L	G	N
Template Known Secondary structure					.	.	.	.	.	.	.	.	.		S						S	S			S			.					.			T	T	S	S														T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.															.					.
Template SS confidence
		203	.	.										.	.	.	.	210	.	.	.	.	.	.	.	.	.		220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions