Job Description P45428 Confidence 3.35% Date Wed Jan 25 15:20:54 GMT 2012 Rank 4 Aligned Residues 194 % Identity 12% Template c2w8aC_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate Resolution 3.35 Å

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		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.				.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																																													.	.	.
Query SS confidence																																																													.	.	.
Query Sequence		M	M	C	G	V	W	L	G	F	G	G	V	L	D	P	T	K	S	S	G	Y	L	I	V	D	I	Y	N	E	I	L	R	M	L	S	N	R	I	A	G	L	G	L	S	I	M	A	V	G	G	Y	A	R	Y	M	E	R	I	G	.	.	.	A	S	R	A	M	V	S	L	L	S	R	P	L	K	L	I	R	S
Query Conservation																																																													.	.	.
Alig confidence																										.	.	.																																	.	.	.
Template Conservation																										.	.	.
Template Sequence		A	W	W	I	S	W	S	P	F	V	G	X	F	L	A	R	I	S	R	G	R	S	I	R	.	.	.	E	F	I	L	G	V	L	L	V	P	A	G	V	S	T	V	W	F	S	I	F	G	G	T	A	I	V	F	E	Q	N	G	E	S	I	W	G	D	G	A	A	E	E	Q	L	F	G	L	L	H	A	L	P
Template Known Secondary structure						T	T												T	T	T					.	.	.																																T						T	T		S										T	S	T
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		372	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.				.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	I	I	L	S	A	T	Y	V	I	G	Q	I	M	A	Q	F	I	T	S	A	S	G	L	G	M	L	L	M	V	T	L	F	P	T	L	V	S	L	G	V	S	R	L	S	A	V	A	V	I	A	T	T	M	S	I	E	W	G	I	L	E	T	N	S	I	F	A	A	Q	V	A	G	M	K	I	A	T	Y
Query Conservation
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	Q	I	X	G	I	I	A	X	I	L	L	G	T	F	F	I	T	S	A	D	S	A	S	T	V	X	G	T	X	S	Q	H	G	Q	L	E	A	N	K	W	V	T	A	A	W	G	V	A	T	A	A	.	.	.	.	.	.	.	.	.	.	.	I	G	L	T	L	L	L	S	G	G	D	N	A	L	S	N
Template Known Secondary structure		T																															T	T	T	T		S	S																.	.	.	.	.	.	.	.	.	.	.										G	G	G
Template Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		449	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.												.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	F	H	Y	Q	L	P	V	A	S	C	V	I	I	S	V	A	I	S	H	F	F	V	Q	R	A	F	D	K	K	D	K	N	I	N	H	E	Q	A	E	Q	K	A	L	D	N	V	P	P	L	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Q	N	V	T	I	V	A	A	T	P	F	L	F	V	V	I	G	L	X	F	A	L	V	K	D	L	S	N	D	V	I	Y	L	E	Y	R	E	Q	Q	R	F	N	A	R	L	A	R	E	R	R
Template Known Secondary structure																														T
Template Predicted Secondary structure
Template SS confidence
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions