Job Description P15770 Confidence 100.00% Date Thu Jan 5 11:34:55 GMT 2012 Rank 17 Aligned Residues 251 % Identity 28% Template c3u62A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from thermotoga maritima Resolution 1.45 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	T	Y	A	V	F	G	N	P	I	A	H	S	K	S	P	F	I	H	Q	Q	F	A	Q	Q	L	N	I	E	H	P	Y	G	R	V	L	A	P	I	N	D	F	I	N	T	L	N	A	F	F	S	A	G	G	K	G	A	N	V	T	V	P	F	K	E	E	A	F	A	R	A	D	E	L	T	E	R	A	A
Query Conservation
Alig confidence				.																																																		.																						.
Template Conservation				.																																																		.																						.
Template Sequence		M	K	.	F	C	I	I	G	Y	P	V	R	H	S	I	S	P	R	L	Y	N	E	Y	F	K	R	A	G	M	N	H	S	Y	G	M	E	E	I	P	P	E	S	F	D	T	E	I	R	R	I	L	E	.	E	Y	D	G	F	N	A	T	I	P	H	K	E	R	V	M	R	Y	V	E	P	.	S	E	D	A	Q
Template Known Secondary structure				.						S	S		T	T		S													T												G	G	G											.			S						T	T		T	T	G	G	G	G	G	S			.
Template Predicted Secondary structure				.																																																		.																						.
Template SS confidence
		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		L	A	G	A	V	N	T	L	M	R	L	E	D	G	R	L	L	G	D	N	T	D	G	V	G	L	L	S	D	L	E	R	L	S	F	I	R	P	G	L	R	I	L	L	I	G	A	G	G	A	S	R	G	V	L	L	P	L	L	S	L	D	C	A	.	V	T	I	T	N	R	T	V	S	R	A	E	E	L	A
Query Conservation																																																																		.
Alig confidence														.	.	.	.	.																			.	.	.																											.
Template Conservation														.	.	.	.	.																			.	.	.
Template Sequence		R	I	K	A	V	N	C	V	F	R	G	K	.	.	.	.	.	G	Y	N	T	D	W	V	G	V	V	K	S	L	E	G	V	E	V	.	.	.	K	E	P	V	V	V	V	G	A	G	G	A	A	R	A	V	I	Y	A	L	L	Q	M	G	V	K	D	I	W	V	V	N	R	T	I	E	R	A	K	A	L	D
Template Known Secondary structure				T							T	T		.	.	.	.	.													T	T	T				.	.	.		S	S							S													T	T									S							T
Template Predicted Secondary structure														.	.	.	.	.																			.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.				.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	F	A	H	T	G	S	I	Q	A	L	S	M	D	E	L	E	G	H	E	F	D	L	I	I	N	A	T	S	S	G	I	S	G	D	I	P	A	I	P	S	S	L	I	H	P	G	I	Y	C	Y	D	M	F	Y	Q	K	G	K	T	P	F	L	A	W	C	E	Q	R	G	S	K	R	N	A	D	G	L	G
Query Conservation
Alig confidence					.	.	.	.																																																				.	.
Template Conservation					.	.	.	.																																																				.	.
Template Sequence		F	P	V	.	.	.	.	K	I	F	S	L	D	Q	L	D	E	V	V	K	K	A	K	S	L	F	N	T	T	S	V	G	M	K	G	E	E	L	P	V	S	D	D	S	L	K	N	L	S	L	V	Y	D	V	I	Y	F	D	.	.	T	P	L	V	V	K	A	R	K	L	G	V	K	H	I	I	K	G	N	L
Template Known Secondary structure		S	S		.	.	.	.					G	G	G							T		S						S	S	T	T	T	T	S				S							T	T		S						S	S	S		.	.											T		S					T
Template Predicted Secondary structure					.	.	.	.																																																				.	.
Template SS confidence
		150	.	.					.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	V	A	Q	A	A	H	A	F	L	L	W	H	G	V	L	P	D	V	E	P	V	I	K	Q	L	Q	E	E	L
Query Conservation
Alig confidence																		.	.
Template Conservation																		.	.
Template Sequence		M	F	Y	Y	Q	A	M	E	N	L	K	I	W	G	I	Y	.	.	D	E	E	V	F	K	E	V	F	G	E	V	L
Template Known Secondary structure														T	T			.	.										G	G	G	G
Template Predicted Secondary structure																		.	.
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions