Job Description P15770 Confidence 96.48% Date Thu Jan 5 11:34:55 GMT 2012 Rank 450 Aligned Residues 144 % Identity 15% Template c3k8zD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:nad-specific glutamate dehydrogenase; PDBTitle: crystal structure of gudb1 a decryptified secondary glutamate2 dehydrogenase from b. subtilis Resolution 2.40 Å

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		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		G	V	G	L	L	S	D	L	E	R	L	S	F	I	R	P	G	L	R	I	L	L	I	G	A	G	G	A	S	R	G	V	L	L	P	L	L	S	L	D	C	A	.	V	T	I	T	N	R	T	V	S	R	A	E	E	L	A	K	L	F	A	H	T	G	S	I	Q	A	L	S	M	D	E	L	E	G	H	E	F
Query Conservation																																												.
Alig confidence																																												.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	I	C	I	K	E	A	A	K	K	R	G	I	D	I	K	G	A	R	V	V	V	Q	G	F	G	N	A	G	S	Y	L	A	K	F	M	H	D	A	G	A	K	V	V	G	I	S	D	A	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	L	Y	D	P	E	G	L	D	I	D	C
Template Known Secondary structure												T	T			G	G	G									S	S												T	T									S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						T	T
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.																		.	.	.	.	.	.	260	.	.	.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.				.	.	.	.	250	.	.	.				.	.
Predicted Secondary structure																																																																		.	.	.									.	.	.
Query SS confidence																																																																		.	.	.									.	.	.
Query Sequence		D	L	I	I	N	A	T	S	S	G	I	S	G	D	I	P	A	I	P	S	S	L	I	H	P	G	I	Y	C	Y	D	M	F	Y	Q	K	G	K	T	P	F	L	A	W	C	E	Q	R	G	S	K	R	N	A	D	G	L	G	M	L	V	A	Q	A	.	.	.	A	H	A	F	L	L	W	H	.	.	.	G	V
Query Conservation																																																																		.	.	.									.	.	.
Alig confidence								.	.	.															.																											.					.	.								.	.	.									.	.	.
Template Conservation								.	.	.															.																											.					.	.
Template Sequence		D	I	L	V	P	A	.	.	.	A	I	E	N	Q	I	T	E	E	N	A	H	N	I	.	R	A	K	I	V	V	E	A	A	N	G	P	T	T	L	E	G	T	K	I	L	S	D	R	D	I	.	L	L	V	P	.	.	D	V	L	A	S	A	G	G	V	T	V	S	Y	F	E	W	V	Q	N	N	Q	G	F
Template Known Secondary structure								.	.	.	S		S		S	B		T	T	T	G	G	G		.			S						S	S	S		B											T	T		.					.	.					T	T																T
Template Predicted Secondary structure								.	.	.															.																											.					.	.
Template SS confidence
		296	.	.	.	300	.				.	.	.	.	.	.	.	.	310	.	.	.	.	.		.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.			.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	D	V	E	P	V	I	K	Q	L	Q	E	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	W	S	E	E	E	V	E	E	K	L	E	K	M	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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