Job Description P15770 Confidence 100.00% Date Thu Jan 5 11:34:55 GMT 2012 Rank 16 Aligned Residues 259 % Identity 36% Template c3donA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from staphylococcus2 epidermidis Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	T	Y	A	V	F	G	N	P	I	A	H	S	K	S	P	F	I	H	Q	Q	F	A	Q	Q	L	N	I	E	H	P	Y	G	R	V	L	A	P	I	N	D	F	I	N	T	L	N	A	F	F	S	A	G	G	K	G	A	N	V	T	V	P	F	K	E	E	A	F	A	R	A	D	E	L	T	E	R	A	A
Query Conservation
Alig confidence				.
Template Conservation				.
Template Sequence		M	K	.	F	A	V	I	G	N	P	I	S	H	S	L	S	P	L	M	H	H	A	N	F	Q	S	L	N	L	E	N	T	Y	E	A	I	N	V	P	V	N	Q	F	Q	D	I	K	K	I	I	S	E	K	S	I	D	G	F	N	V	T	I	P	H	K	E	R	I	I	P	Y	L	D	D	I	N	E	Q	A	K
Template Known Secondary structure				.						S	S		T	T														T	T												G	G	G	G	G	G								T	T		S						T	T		T	T	T	T	G	G	G		S
Template Predicted Secondary structure				.
Template SS confidence
		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.		.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		L	A	G	A	V	N	T	L	M	R	L	E	D	G	R	L	L	G	D	N	T	D	G	V	G	L	L	S	D	L	E	R	L	S	F	I	R	P	G	L	R	I	L	L	I	G	A	G	G	A	S	R	G	V	L	L	P	L	L	S	L	D	C	A	.	V	T	I	T	N	R	T	V	S	R	A	E	E	L	A
Query Conservation																																																																		.
Alig confidence												.																																																						.
Template Conservation												.
Template Sequence		S	V	G	A	V	N	T	V	L	V	.	K	D	G	K	W	I	G	Y	N	T	D	G	I	G	Y	V	N	G	L	K	Q	I	Y	E	G	I	E	D	A	Y	I	L	I	L	G	A	G	G	A	S	K	G	I	A	N	E	L	Y	K	I	V	R	P	T	L	T	V	A	N	R	T	M	S	R	F	N	N	W	S
Template Known Secondary structure				T								.		T	T																				S	T	T	G	G	G									S												T	T			S							S		G	G	G	G	T	T
Template Predicted Secondary structure												.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	F	A	H	T	G	S	I	Q	A	L	S	M	D	E	L	E	G	H	E	F	D	L	I	I	N	A	T	S	S	G	I	S	G	D	I	P	A	I	P	S	S	L	I	H	P	G	I	Y	C	Y	D	M	F	Y	Q	K	G	K	T	P	F	L	A	W	C	E	Q	R	G	S	K	R	N	A	D	G	L	G
Query Conservation
Alig confidence					.	.	.	.																											.	.	.	.	.	.																																			.
Template Conservation					.	.	.	.																											.	.	.	.	.	.																																			.
Template Sequence		L	N	I	.	.	.	.	N	K	I	N	L	S	H	A	E	S	H	L	D	E	F	D	I	I	I	N	T	T	P	D	S	V	.	.	.	.	.	.	I	S	L	N	R	L	A	S	H	T	L	V	S	D	I	V	Y	N	P	Y	K	T	P	I	L	I	E	A	E	Q	R	G	N	P	.	I	Y	N	G	L	D
Template Known Secondary structure		S			.	.	.	.											T	G	G	G		S										S	.	.	.	.	.	.	S			T	T			S	S						S			S	S	S	S										T	T			.				T
Template Predicted Secondary structure					.	.	.	.																											.	.	.	.	.	.																																			.
Template SS confidence
		159	160	.					.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.							.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	V	A	Q	A	A	H	A	F	L	L	W	H	G	V	L	P	D	V	E	P	V	I	K	Q	L	Q	E	E	L	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	F	V	H	Q	G	A	E	S	F	K	I	W	T	N	L	E	P	D	I	K	A	M	K	N	I	V	I	Q	K	L	K	G
Template Known Secondary structure																S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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