 |
Job Description | P15770 | Confidence | 96.95% | Date | Thu Jan 5 11:34:55 GMT 2012 |
Rank | 368 | Aligned Residues | 114 |
% Identity | 12% | Template | c2ixaA_ |
PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase; |
PDBTitle: a-zyme, n-acetylgalactosaminidase
|
Resolution | 2.3 Å |
|
 |
  |   |
121 | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | |
. | |
. | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | |
|
|
|
|
|
|
|
. | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |  | . |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . |
|
|
|  |  |
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |
|  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | I | L | L | I | G | A | G | G | A | S | R | G | V | L | L | P | L | L | S | L | D | C | . |
A | . |
V | T | I | T | N | R | T | V | S | R | A | E | E | L | A | K | L | F | A | H | T | . |
. |
. |
. |
. |
. |
. |
. |
G | S | I | Q | A | L | S | M | D | E | L | E | G | H | E | F | D | L | I | I | N | A | T | S | S |
Query Conservation |   |
  |
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |   |
|   |   |   |
|   | . |   | . |
|   |
|   |
|
|   |   |   |
|
|   |   |
|
|   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|
|
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |   |   |
|
|
|
|   |
|   |
|
|   |
Template Sequence |   |
R | I | A | F | I | A | V | G | L | R | G | Q | T | H | V | E | N | M | A | R | R | D | D | V | E | I | V | A | F | A | D | P | D | P | Y | M | V | G | R | A | Q | E | I | L | K | K | N | G | K | K | P | A | K | V | F | G | N | G | N | D | D | Y | K | N | M | L | K | D | K | N | I | D | A | V | F | V | S | S | P | W |
Template Known Secondary structure |   |
 |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  | T |
| T | T |  |  |  |  |  |  |  |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|
|  |  |  |
| S | S | T | T | T |  |  |  |  | T | T |
| T | T |
|
|  |  |  |  |
|
|
| G |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
22 | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . |
  |
  |   |
191 | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | |
|
. | . | . | . | . | . | . | |
220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|  |  |  |  |  | . | . |  |  |
|
|
|
|
| . |
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | I | S | G | D | I | P | A | I | P | S | S | L | I | H | P | G | I | Y | C | Y | D | . |
. |
M | F | Y | Q | K | G | K | . |
T | P | F | L | A | W | C | E | Q | R | G | S | K | R | N | A | D |
Query Conservation |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
| . | . |   |
|
|   |
|   |   | . |
|   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   | . | . |
|   |   |   |   |   |   |
|
|   |
|
|
|
|
|   |   |
|
|
|
|
|   |
|   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |   |
|   |
Template Sequence |   |
E | W | . |
. |
H | H | E | H | G | V | A | A | M | K | A | G | K | I | V | G | M | E | V | S | G | A | I | T | L | E | E | C | W | D | Y | V | K | V | S | E | Q | T | G | V | P | L | M | A | L |
Template Known Secondary structure |   |
G | G | . | . |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |
|
|
|
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
Template Predicted Secondary structure |   |
|
| . | . |
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
102 | . | |
|
. | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|