 |
Job Description | P15770 | Confidence | 97.20% | Date | Thu Jan 5 11:34:55 GMT 2012 |
Rank | 313 | Aligned Residues | 121 |
% Identity | 11% | Template | c2d0iC_ |
PDB info |
PDB header:oxidoreductase | Chain: C: PDB Molecule:dehydrogenase; |
PDBTitle: crystal structure ph0520 protein from pyrococcus horikoshii ot3
|
Resolution | 1.95 Å |
|
 |
  |   |
102 | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | G | V | G | L | L | S | D | L | E | R | L | S | F | I | R | P | G | L | R | I | L | L | I | G | A | G | G | A | S | R | G | V | L | L | P | L | L | S | L | D | C | A | V | T | I | T | N | R | T | V | S | R | A | E | E | L | A | K | L | F | A | H | T | G | S | I | Q | A | L | S | M | D | E | L | E | G | H | E | F |
Query Conservation |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |   |
|   |   |   |
|   |   |
|   |
|   |
|
|   |   |   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|
|
|
|
|   |
|   |
|
|   |   |
|
|   |   |   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |
|
|
|   |   |
|
Template Sequence |   |
E | S | H | A | K | I | W | T | G | F | K | R | I | E | S | L | Y | G | K | K | V | G | I | L | G | M | G | A | I | G | K | A | I | A | R | R | L | I | P | F | G | V | K | L | Y | Y | W | S | R | H | R | K | V | N | V | E | K | E | L | . |
. |
. |
. |
. |
. |
. |
K | A | R | Y | M | D | I | D | E | L | L | E | K | S |
Template Known Secondary structure |   |
|
|  |  |  |  |  | T | T | S |
|
|
|
|
| S | T | T |
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  | G | G | G | T |
|  |  |  |  |  |
| T | T |
|
|  |  |  |  |  |  |  | . | . | . | . | . | . | . |
|
|  |  |
|
|  |  |  |  |  |  |  |
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
| . | . | . | . | . | . | . |
|
|  |  |
|
|  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
129 | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . |
  |
  |   |
182 | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | |
|
. | . | . | . | . | . | 210 | . | . | . | . | . | . | . | |
. | . | 220 | . | . | . | . | . | . | . | . | . | 230 |
Predicted Secondary structure |   |
|  |  |  |  |
|  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  | . | . |
|
|
|
|  |  |  |  |  |  |  |
|
|
| . |
|
|
|  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | L | I | I | N | A | T | S | S | G | I | S | G | D | I | P | A | I | P | S | S | L | . |
. |
I | H | P | G | I | Y | C | Y | D | M | F | Y | Q | K | . |
G | K | T | P | F | L | A | W | C | E | Q | R | G |
Query Conservation |   |
|
|
|
|
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   | . | . |
|   |   |   |   |   |
|   |
|   |
|
|   |
| . |   |   |
|   |
|
|   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|
|   |   |   |
|
|
|
|   |   |
|   |   |
|
|   |   |   |   |
|   |   |
|
| . |
|
|   |
|
|
|   |
|
|
|   |   |
|
|
|   |
|
|   |   |
|
|   |   |
|
Template Sequence |   |
D | I | V | I | L | A | L | P | L | T | R | D | T | Y | H | I | I | N | E | E | R | V | K | K | L | E | . |
G | K | Y | L | V | N | I | G | R | G | A | L | V | D | E | K | A | V | T | E | A | I | K | Q | G |
Template Known Secondary structure |   |
S |  |  |  |  |
|
|
|
|
| T | T | T | T | T | T | B |
|  |  |  |  |  |  | T | T | . | T |
|  |  |  |  |
| S |
| G | G | G | B |
|  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |
|
|
|
|
|  |  |
|  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
202 | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | |
. | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|