 |
Job Description | P15770 | Confidence | 97.04% | Date | Thu Jan 5 11:34:55 GMT 2012 |
Rank | 354 | Aligned Residues | 78 |
% Identity | 15% | Template | c1pzfD_ |
PDB info |
PDB header:oxidoreductase | Chain: D: PDB Molecule:lactate dehydrogenase; |
PDBTitle: t.gondii ldh1 ternary complex with apad+ and oxalate
|
Resolution | 2.20 Å |
|
 |
  |   |
118 | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | |
. | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | |
|
|
|
|
|
|
. | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . |
|
|
|
|  |  |
|
|
|  |  |
|
|
|
|
|
|
|  |  |  |  |
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | G | L | R | I | L | L | I | G | A | G | G | A | S | R | G | V | L | L | P | L | L | S | L | D | C | . |
A | V | T | I | T | N | R | T | V | S | R | A | E | E | L | A | K | L | F | A | H | . |
. |
. |
. |
. |
. |
. |
T | G | S | I | Q | A | L | S | M | D | E | L | E | G | H | E | F | D | L | I | I | N | A | T | S |
Query Conservation |   |
  |
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |   |
|   |   |   |
|   | . |   |
|   |
|   |
|
|   |   |   |
|
|   |   |
|
|   |   |   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |
|
|
|
|
|   |
|
|   |   |   |
|   |   |
|   |   |   |   |
|   |
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|
|   |   |
|
|
|
|
|
|
|
|
|
Template Sequence |   |
R | R | K | K | V | A | M | I | G | S | G | M | I | G | G | T | M | G | Y | L | C | A | L | R | E | L | A | D | V | V | L | Y | D | V | V | K | G | M | P | E | G | K | A | L | D | L | S | H | V | T | S | V | V | D | T | N | V | S | V | R | A | E | Y | S | Y | E | A | A | L | T | G | A | D | C | V | I | V | T | A | G |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  | S |
| S |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  |
| S | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|
|  |  |  |
|
| S |  |  |  |  |  | T | T |
| S |  |  |  |  |
|
| S |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
19 | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . |
  |
  |   |
190 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
Query Sequence |   |
S | G | I | S | G | D |
Query Conservation |   |
  |
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |
|
Template Sequence |   |
L | T | K | V | P | G |
Template Known Secondary structure |   |
| S | S |
| T | T |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
  |   |
100 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|