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Job DescriptionP0ABH0
Confidence99.13%DateThu Jan 5 11:15:29 GMT 2012
Rank51Aligned Residues388
% Identity14%Templatec3jvpA_
PDB info PDB header:transferaseChain: A: PDB Molecule:ribulokinase; PDBTitle: crystal structure of ribulokinase from bacillus halodurans
Resolution2.31 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   8.10.........20.........30.........40......... 50.........60.........70.....
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Query Sequence  KLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSRGMDKG. . . . . . . . . . . . GVNDLESVVKCVQRAIDQAELMADCQ
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Template Sequence  KYTIGVDYGTESGRAVLIDL. SNGQELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVEVLTTSVPAVMKEDADD
Template Known Secondary structure 

SST.TT


TT

BSSBSTTS

B

TT


TT


S
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   5....10.........20.... .....30.........40.........50.........60.........70.........80...
 
   76...80.........90.........100. ........110.
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Query Sequence  ISSVYLALSGKHISCQNEIGMVPISE. . . . . . . . . . . . . . . . . . . . . . . . EEVTQEDVEN. . . . . . . . . . . . . . . . . . . .
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Template Sequence  VIGIGVDFTACTMLPVDEE. GQPLCLLAQYKDNPHSWVKLWKHHAAQDKANAINEMAEKRGEAFLPRYGGKISSEWMIAK
Template Known Secondary structure 
SS

TT.S
BGGGSSSTTSSGGGS
TT

TTT
TTGGGGTT


SSS
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   87..90.........100..... ....110.........120.........130.........140.........150.........160.....
 
   112.......120.........130.........140...... ...150.........160.........170
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Query Sequence  VVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNP. VGLSGVRMQAKVHLITCHNDMAKN. . . . . . . . . . . . . . . . . . . .
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Template Sequence  VWQILDEAEDVYNRTDQFLEATDWIVSQMTGKIVKNSCTAGYKAIWHKREGYPSNEFFKALDPRLEHLTTTKLRGDIVPL
Template Known Secondary structure 
SSS

S

BTTTBS

TT
GGGTTSTTTTT
S

T
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   166...170.........180.........190.........200.........210.........220.........230.........240.....
 
   171........180.........190.........200. ........210.........220... ..
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Query Sequence  . . . . . . . IVKAVERCGLKVDQLIFAGLASSYSVLTEDE. RELGVCVVDIGGGTMDIAVYTG. . . . . . . . . . . . . . . . . GA
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Template Sequence  GERAGGLLPEMAEKMGLNPGIAVAVGNVDAHAAVPAVGVTTPGKLVMAMGTSICHMLLGEKEQEVEGMCGVVEDGIIPGY
Template Known Secondary structure  TS

TS
TT


TTTTTT

SSSSSSS



TT
STSSSTTS
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   246...250.........260.........270.........280.........290.........300.........310.........320.....
 
   226...230.........240.........250.........260.........270.... .....280.........
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Query Sequence  LRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDES. . . . . . VEVPSVGGRPPRSLQ. . . . . . . . . .
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Template Sequence  LGYEAGQSAVGDIFAWFVKHGVSAATFDEAQEKGVNVHALLEEKASQLRPGESGLLALDWWNGNRSILVDTELSGMLLGY
Template Known Secondary structure  S
STS
TT

TSS
TTSS



TT


TTT

SS




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   326...330.........340.........350.........360.........370.........380.........390.........400.....
 
   290.........300.........310.........320.........330....... ..340.........350.........360......
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Query Sequence  . . RQTLAEVIEPRYTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVLTGG. AAQIEGLAACAQRVFHTQVRIGAPLNITG
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Template Sequence  TLQTKPEEIYRALLEATAFGTRAIVDAFHGR. . . . . . . GVEVHELYACGGLPQKNHLLMQIFADVTNREIKVAASKQ. . .
Template Known Secondary structure 
TT

TT.......T

SS
TS
B

SS...
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   406...410.........420.........430...... ...440.........450.........460.........470.....
 
   367..370.........380...... ...390.........400.........410.......
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Query Sequence  LTDYAQEPYYSTAVGLLHYG. . . . . . . . . . . . . . . . . KESHLNGEAEVEKRVTASVGSWIKRLNSWLR
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Template Sequence  . . . . . . . . . . TPALGAAMFASVAAGSEVGGYDSIEEAAKKMGRVKDETFKPIPEHVAIYEKLYQEYVT
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SSSSS
S


B
S

B


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   476...480.........490.........500.........510.........520.........530...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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