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Job DescriptionP0ABH0
Confidence100.00%DateThu Jan 5 11:15:29 GMT 2012
Rank11Aligned Residues321
% Identity20%Templatec3iucC_
PDB info PDB header:chaperoneChain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30...... ...40........ .50.........60.........70.........
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Query Sequence  DRKLVVGLEIGTAKVAALVGEVLPDGMVNII. . . . GVGSCPSRGMDK. . GGVNDLESVVKCVQRAIDQAELMADCQISSV
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Template Sequence  DVGTVVGIDLGTTYSCVGVFK. . . NGRVEIIANDQGNRITPSYVAFTPEGERL. . . . . . . . . . . IGDAAKNQLTSNPENT
Template Known Secondary structure  SB



SS...TT


TTS
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TTS
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STT
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   26...30.........40...... ...50.........60.........70..... ....80.........90.
 
   80..... ....90.........100.........110.........120.........130
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Query Sequence  YLALSG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . KHISCQNEIGMVPISEEEVTQEDVENVVHTAKSVRVRDEHRVLHV
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Template Sequence  VFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKTKPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVT
Template Known Secondary structure 

GGGTTT

TT
TT
SSTT
STT

TSB

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   92.......100.........110.........120.........130.........140.........150.........160.........170.
 
   131........140.........150.........160.........170.........180.........190.........200.........210
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Query Sequence  IPQEYAIDYQEGIKNPVGLSGVRMQAKVHLITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVLTEDERELGVCVVD
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Template Sequence  VPAYF. . . . . . . . . . . . . . . . . . . . . . . . . . . . NDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLD. KGEKNILVFD
Template Known Secondary structure 
TT
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   172.... ...180.........190.........200.........210.. .......220..
 
   211........220..... ....230.........240.........250.........260.........270....
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Query Sequence  IGGGTMDIAVYTGGA. . . . . LRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDES. . . . . . . . . . .
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Template Sequence  LGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQ
Template Known Secondary structure 
SS
TTTT
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TT
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   225....230.........240.........250.........260.........270.........280.........290.........300....
 
   275....280.........290.........300.........310.........320.........330.........340.........350
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Query Sequence  . . . . VEVPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQR
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Template Sequence  ARIEIESFYEGEDFSETLTRAKFEELNMDLFRSTMKPVQKVLE. . . . . . . DSDLKKSDIDEIVLVGGSTRIPKIQQLVKE
Template Known Secondary structure  TTTTT.......TT

GGG

SGGGG
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   305....310.........320.........330.........340....... ..350.........360.........370.......
 
   351........360.........370.........380.......
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Query Sequence  VFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGK
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Template Sequence  FFNGKE. . . . . . . . . . . PSRGINPDEAVAYGAAVQAG
Template Known Secondary structure  TTT

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   378.380... ......390.........400...
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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