Job Description P0ABH0 Confidence 96.79% Date Thu Jan 5 11:15:29 GMT 2012 Rank 84 Aligned Residues 273 % Identity 14% Template c2gupA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rok family protein; PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose Resolution 2.01 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	G	L	E	I	G	T	A	K	V	A	A	L	V	G	E	V	L	P	D	G	M	V	N	I	I	G	V	G	S	C	P	S	R	G	M	D	K	G	G	V	N	D	L	E	S	V	V	K	C	V	Q	R	A	I	D	Q	A	E	L	M	A	D	C	Q	I	S	S	V	Y	L	A	L	S	G	K	H	I	S
Query Conservation
Alig confidence																	.	.																	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.													.	.	.	.
Template Conservation																	.	.																	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.													.	.	.	.
Template Sequence		I	A	T	I	D	I	G	G	T	G	I	K	F	A	S	.	.	L	T	P	D	G	K	I	L	D	K	T	S	I	S	T	P	.	.	.	.	.	.	.	.	.	E	N	L	E	D	L	L	A	W	L	D	Q	R	L	S	E	.	.	.	.	.	.	Q	D	Y	S	G	I	A	X	S	V	P	G	.	.	.	.
Template Known Secondary structure									T	T							.	.			T	T													.	.	.	.	.	.	.	.	.	S	S													T	T	.	.	.	.	.	.	S			S							S	S	.	.	.	.
Template Predicted Secondary structure																	.	.																	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.													.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.			.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.										.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.							50	.	.	.	.	.	.	.	.	.	60	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Q	N	E	I	G	M	V	P	I	S	E	E	E	V	T	Q	E	D	V	E	N	V	V	H	T	A	K	S	V	R	V	R	D	E	H	R	V	L	H	V	I	P	Q	E	Y	A	I	D	Y	Q	E	G	I	K	N	P	V	G	L	S	G	V	R	M	Q	A	K	V	H	L	I	T	C	H	N	D	M	A	K
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	N	Q	E	T	G	V	I	D	G	F	S	A	V	P	Y	I	H	G	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T		B			S			S	S	G	G	G	S	S	S	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.														.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	I	V	K	A	V	E	R	C	G	L	K	V	D	Q	L	I	F	A	G	L	A	S	S	Y	S	V	L	T	E	D	E	R	E	L	G	V	C	V	V	D	I	G	G	G	T	M	D	I	A	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	G	A	L	R	H	T	K	V	I	P	Y	A	G
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.												.																																								.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.												.
Template Sequence		.	W	Y	E	A	L	S	S	Y	Q	L	P	.	V	H	L	E	N	D	A	N	C	V	G	L	S	E	L	L	A	H	P	E	L	E	N	A	A	C	V	V	I	G	T	G	I	G	G	A	X	I	I	N	G	R	L	H	R	G	R	H	G	L	G	G	E	F	G	Y	X	T	T	L	A	P	A	E	K	L	N
Template Known Secondary structure		.					T	G	G	G				.																			T	T		S	S							S	S	S								T	T						T	T	S		T	T		G	G	G		B	S	S			S	S	S
Template Predicted Secondary structure		.												.
Template SS confidence
			84	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	V	T	S	D	I	A	Y	A	F	G	T	P	P	S	D	A	E	A	I	K	V	R	H	G	C	A	L	G	S	I	V	G	K	D	E	S	V	E	V	P	S	V	G	G	R	P	P	R	S	L	Q	R	Q	T	L	A	E	V	I	E	P	R	Y	T	E	L	L	N	L	V	N	E	E	I	L	Q	L	Q
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	W	S	Q	L	A	S	T	G	N	X	V	R	Y	V	I	E	K	S	G	H	T	D	W	D	G	R	K	I	Y	Q	E	A	A	A	G	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	C	Q	E	A	I	E	R	X	N	R	N	L	A	Q	G	L	L	N	I	Q
Template Known Secondary structure		B						S													S	S														T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.																						.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	L	R	Q	Q	G	V	K	H	H	L	A	A	G	I	V	L	T	G	G	A	A	Q	I	E	G	L	A	A	C	A	Q	R	V	F	H	T	Q	V	R	I	G	A	P	L	N	I	T	G	L	T	D	Y	A	Q	E	P	Y	Y	S	T	A	V	G	L	L	H	Y	G	K	E	S	H	L	N
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.
Template Sequence		Y	L	I	.	.	.	.	.	.	.	.	D	P	G	V	I	S	L	G	G	S	I	S	Q	N	P	D	F	I	Q	G	V	K	K	A	V	E	D	F	V	D	A	Y	E	E	Y	T	V	A	P	V	I	Q	A	C	T	Y	H	A	D	A	N	L	Y	G	A	L	V	N	W	L	Q	E	E	K	Q
Template Known Secondary structure					.	.	.	.	.	.	.	.			S						S	G	G	G	G																				T	T			S								S		S	T	T														T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.									.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions