Job Description P0ABH0 Confidence 96.67% Date Thu Jan 5 11:15:29 GMT 2012 Rank 86 Aligned Residues 285 % Identity 12% Template c1z05A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. Resolution 2.00 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.
Predicted Secondary structure																																																																														.
Query SS confidence																																																																														.
Query Sequence		T	D	R	K	L	V	V	G	L	E	I	G	T	A	K	V	A	A	L	V	G	E	V	L	P	D	G	M	V	N	I	I	G	V	G	S	C	P	S	R	G	M	D	K	G	G	V	N	D	L	E	S	V	V	K	C	V	Q	R	A	I	D	Q	A	E	L	M	A	D	C	Q	I	S	S	V	Y	.	L	A	L
Query Conservation																																																																														.
Alig confidence																									.	.																.	.	.	.	.	.	.	.																													.
Template Conservation																									.	.																.	.	.	.	.	.	.	.
Template Sequence		N	L	G	W	Q	F	L	S	M	R	L	G	R	G	Y	L	T	I	A	L	H	E	L	.	.	G	G	E	V	L	I	D	T	K	I	D	I	H	E	I	.	.	.	.	.	.	.	.	D	Q	D	D	V	L	A	R	L	L	F	E	I	E	E	F	F	Q	T	Y	A	A	Q	L	D	R	V	T	S	I	A	I
Template Known Secondary structure			T	T										T	T									T	.	.	T	S														.	.	.	.	.	.	.	.	B																			T	T	T	T
Template Predicted Secondary structure																									.	.																.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.									.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	K	H	I	S	C	Q	N	E	I	G	M	V	P	I	S	E	E	E	V	T	Q	E	D	V	E	N	V	V	H	T	A	K	S	V	R	V	R	D	E	H	R	V	L	H	V	I	P	Q	E	Y	A	I	D	Y	Q	E	G	I	K	N	P	V	G	L	S	G	V	R	M	Q	A	K	V	H	L	I	T	C
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	L	P	G	L	V	N	S	E	Q	G	I	V	L	Q	M	P	H	Y	N	V	K	N	L	A	L	G	P	E	I	Y	K	A	T	G	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S	S				T	T	T	T						S	S	S	B		S	S	B												S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	N	D	M	A	K	N	I	V	K	A	V	E	R	C	G	L	K	V	D	Q	L	I	F	A	G	L	A	S	S	Y	S	V	L	T	.	.	E	D	E	R	E	L	G	V	C	V	V	D	I	G	G	G	T	M	D	I	A	V	Y	T	G	G	A	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																					.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	V	A	N	D	T	R	A	W	A	L	A	E	K	L	F	G	H	S	Q	D	V	D	N	S	V	L	I	S	I	H	H	G	.	L	G	A	G	I	V	L	D	G	R	V	L	Q	G	R	H	G	N	I	G	E	L	G	H	I	Q
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		S	T	T	T	T		S	S							S	S	S	.								T	T					T	T	T	T		T	T	B		T	T	S	B
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Template SS confidence
																					188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.		.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
					228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	H	T	K	V	I	P	Y	A	G	N	V	V	T	S	D	I	A	Y	A	F	G	T	P	P	S	D	A	E	A	I	K	V	R	H	G	C	A	L	G	S	I	V	G	K	D	E	S	V	E	V	P	S	V	G	G	R	P	P	R	S	L	Q	R	Q	T	L	A	E	V	I	E	P	R	Y	T	E	L
Query Conservation		.	.	.
Alig confidence		.	.	.																																																											.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.
Template Sequence		I	D	P	Q	G	K	R	C	H	C	G	N	Y	G	C	L	E	T	V	A	S	S	Q	A	I	R	D	Q	V	T	A	R	I	Q	A	G	E	P	S	C	L	A	T	V	E	E	I	S	I	E	D	I	C	A	A	A	A	D	G	D	P	.	.	.	.	.	.	.	.	.	.	L	A	V	D	V	I	Q	Q	L
Template Known Secondary structure				T	T			B		T	T	S		B	S	B	T					S														T	T				T	T	T	T		S	S												T	T			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.											.	310	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.									.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																																						.														.	.	.	.	.	.	.	.
Query SS confidence																																						.														.	.	.	.	.	.	.	.
Query Sequence		L	N	L	V	N	E	E	I	L	Q	L	Q	E	K	L	R	Q	Q	G	V	K	H	H	L	A	A	G	I	V	L	T	G	G	A	A	Q	.	I	E	G	L	A	A	C	A	Q	R	V	F	H	.	.	.	.	.	.	.	.	T	Q	V	R	I	G	A	P	L	N	I	T	G	L	T	D	Y	A	Q	E	P	Y
Query Conservation																																						.														.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.														.														.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Template Sequence		G	R	Y	L	G	A	A	I	A	I	V	I	N	L	F	.	.	.	.	.	.	.	.	N	P	E	K	I	L	I	G	G	V	I	N	Q	A	K	S	I	L	Y	P	S	I	E	Q	C	I	R	E	Q	S	L	P	V	Y	H	Q	D	L	K	L	V	E	S	R	F	.	.	.	.	.	.	.	.	.	.	Y	K
Template Known Secondary structure																	.	.	.	.	.	.	.	.			S						S	G	G	G	G	G																S						T	T							S		.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.																																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.									.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.											.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	S	T	A	V	G	L	L	H	Y	G	K	E	S	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	A	T	M	P	G	A	A	L	I	K	Q	A	L	Y
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions