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Job DescriptionP76577
Confidence98.20%DateThu Jan 5 12:24:46 GMT 2012
Rank74Aligned Residues242
% Identity24%Templated1w5da1
SCOP infobeta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like Dac-like
Resolution2.1

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   279280.........290.........300.........310.........320.........330.........340.........350....
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Query Sequence  GLQRRLEELAQNWKGRLPPRSSLAMIVVDHTDMRVRGWVGSVDLNDDSRFGHVDMVNSIRSPGSVLKPFVYGLALD. . . .
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Template Sequence  ALSGQIDKILAD. . HPALEGAMAGITVRSAETGAVLYEHSG. . . . . . . . . . . . . . . DTRMRPASSLKLLTAAAALSVLGE
Template Known Secondary structure  ..
GGGTT
TTT

ST...............TS
B

GGGG
T
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   6...10....... ..20.........30.........40.... .....50.........60........
 
   355....360.........370.........380.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EGLIHPASLLQDVPRRTGDYRPGNFDS
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Template Sequence  NYSFTTEVRTDGTLKGKKLNGNLYLKGKGDPTLLPSDFDKMAEILKHSGVKVIKGNLIGDDTWHDDMRLSPDMPWSDEYT
Template Known Secondary structure  T


SS

SSS
S

S
TT

TT

SS

TTS
S

S
TT

GGGTTB
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   6970.........80.........90.........100.........110.........120.........130.........140........
 
   382......
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Query Sequence  GFHGPIS. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation     
 

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Template Conservation   
 
    
  
 
             
    
    
   
      
 
   
                       
 
Template Sequence  YYGAPISALTASPNEDYDAGTVIVEVTPNQKEGEEPAVSVSPKTDYITIKNDAKTTAAGSEKDLTIEREHGTNTITIEGS
Template Known Secondary structure  GGG



SS


SSTT

TT

SSSSS

S

SSS
TTS




TTSS
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   149150.........160.........170.........180.........190.........200.........210.........220........
 
   389390.........400.....
Predicted Secondary structure  ...............................................................

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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . MSEALVRSLNLPAVQVL
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Template Conservation                 

           
   

 
 
       
     
    
 

 


  

  


  

 
 
Template Sequence  VPVDANKTKEWISVWEPAGYALDLFKQSLKKQGITVKGDIKTGEAPSSSDVLLSHRSMPLSKLFVPFMKLSNNGHAEVLV
Template Known Secondary structure  SS



SSTT
SS




TTS


T
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   229230.........240.........250.........260.........270.........280.........290.........300........
 
   406... 410.........420.........430......... 440.........450.........460.........470..
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Query Sequence  EAYG. . . . . . . . . . . . PKRFAAKLRNVGLPLYLPNGAAPNLSLILG. GAGAKLEDMAAAYTAFARHGKAGKLRLQPDDPL
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Template Sequence  KEMGKVKKGEGSWEKGLEVLNSTLPEFGVD. . . SKSLVLRDGSGISHIDAVSSDQLSQLLYDIQ. . . . . . . . . . . . . . . .
Template Known Secondary structure  TS

SGGGGT

...GGG
B
S
SSS

TT
BB
T................
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   309310.........320.........330........ .340.........350.........360.........
 
   473......480.........490.........500....... ..510.........520...... ...530.........540...
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Query Sequence  LERPLMSSGAAWIIRRIMADEAQPLPDSALPRVAP. . . . LAWKTGTSYGYRDAWAIGV. . . . . NARYVIGIWTGRPDGTP
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Template Sequence  . DQSWFSAYLNSLPVAGNPDRMVGGTLRNRMKGTPAQGKVRAKTGSLSTVSS. . LSGYAETKSGKKLVFSILLN. . . . . .
Template Known Secondary structure  .TSTTS
BTT
SSGGGTTSSTTSTTTTTTT..
SSS
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   370.........380.........390.........400.........410.........420 .........430.........440
 
   544.....550.........560.......
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Query Sequence  VVGQFGFASAVPLLNQVNNILLSR
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Template Conservation  ..        
   
 
   

 
Template Sequence  . . GLIDEEDGKDIEDQIAVILANQ
Template Known Secondary structure  ..S
SSGGGT
Template Predicted Secondary structure  ..






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   441........450.........460..
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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