Phyre 2 alignment of P76577 with d1vqqa3

Job Description P76577
Confidence 100.00% Date Thu Jan 5 12:24:46 GMT 2012

Rank 23 Aligned Residues 285

% Identity 15% Template d1vqqa3

SCOP info beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase

Resolution 1.80

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.																		.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	L	D	A	G	L	Q	R	R	L	E	E	L	A	Q	N	W	K	G	R	L	P	P	R	S	S	L	A	M	I	V	V	D	H	T	D	M	R	V	R	G	W	V	G	S	V	D	L	N	D	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F	G	H	V	D	M	V	N	S	I	R
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.
Template Sequence	I	D	A	K	V	Q	K	S	I	Y	N	N	M	K	N	.	.	.	.	.	.	.	.	D	Y	G	S	G	T	A	I	H	P	Q	T	G	E	L	L	A	L	V	S	T	P	S	Y	D	V	Y	P	F	M	Y	G	M	S	N	E	E	Y	N	K	L	T	E	D	K	K	E	P	L	L	N	K	F	Q	I	T	T
Template Known Secondary structure														T	T	.	.	.	.	.	.	.	.	S	S								T	T	T	T									S				S																	T		T	T		T	T	S		T	T	T	S		B
Template Predicted Secondary structure																.	.	.	.	.	.	.	.
Template SS confidence
	328	.	330	.	.	.	.	.	.	.	.	.	340	.	.									.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

	339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.						.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence	S	P	G	S	V	L	K	P	F	V	Y	G	L	A	L	D	E	G	L	I	H	P	A	S	L	L	Q	D	V	P	R	R	T	.	.	.	.	.	G	D	Y	R	P	G	N	F	D	S	G	F	H	G	P	I	S	M	S	E	A	L	V	R	S	L	N	L	P	A	V	Q	V	L	E	A	Y	G	P	K	R	F
Query Conservation																																		.	.	.	.	.
Alig confidence																																		.	.	.	.	.
Template Conservation
Template Sequence	S	P	G	S	T	Q	K	I	L	T	A	M	I	G	L	N	N	K	T	L	D	D	K	T	S	Y	K	I	D	G	K	G	W	Q	K	D	K	S	W	G	G	Y	N	V	T	R	Y	E	V	V	N	G	N	I	D	L	K	Q	A	I	E	S	S	D	N	I	F	F	A	R	V	A	L	E	L	G	S	K	K	F
Template Known Secondary structure			G	G	G												T	T	S	S		T	T							S	S				S	S	G	G	G	T	T						S	S														T	T
Template Predicted Secondary structure
Template SS confidence
	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.

	414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.																		.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.			470	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Query Sequence	A	A	K	L	R	N	V	G	L	P	L	Y	L	P	N	G	A	A	P	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	I	L	G	G	A	G	A	K	L	E	D	M	A	A	A	Y	T	A	F	A	R	H	G	K	A	G	K	L	R	L	Q	P	D	.	.	D	P	L	L	E
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.
Template Conservation
Template Sequence	E	K	G	M	K	K	L	G	V	G	E	D	I	P	S	D	Y	P	F	Y	N	A	Q	I	S	N	K	N	L	D	N	E	I	L	L	A	D	S	G	Y	G	Q	G	E	I	L	I	N	P	V	Q	I	L	S	I	Y	S	A	L	E	N	N	G	N	I	N	A	P	H	L	L	K	D	T	K	N	K	V	W	K
Template Known Secondary structure							T	T	T	T	S					S	S						B	S		S	S				S									T	T		S	S		B	B											G	G	G	T	T	T						B			T	T	S
Template Predicted Secondary structure
Template SS confidence
	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.

	475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.		.	.	.	.	.	.	510	.	.	.	.	.			.	.	.	.	520	.	.	.	.	.	.				.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.													.	.												.	.	.
Query SS confidence																														.													.	.												.	.	.
Query Sequence	R	P	L	M	S	S	G	A	A	W	I	I	R	R	I	M	A	D	E	A	Q	P	L	P	D	S	A	L	P	.	R	V	A	P	L	A	W	K	T	G	T	S	.	.	Y	G	Y	R	D	A	W	A	I	G	V	.	.	.	N	A	R	Y	V	I	G	I	W	T	G	R	P	D	G	T	P	V	V	G	Q	F
Query Conservation																														.													.	.												.	.	.
Alig confidence																														.													.	.												.	.	.																			.
Template Conservation																																																																													.
Template Sequence	K	N	I	I	S	K	E	N	I	N	L	L	T	D	G	M	Q	Q	V	V	N	K	T	H	K	E	D	I	Y	R	S	Y	A	N	L	I	G	K	S	G	T	A	E	L	K	G	R	Q	I	G	W	F	I	S	Y	D	K	D	N	P	N	M	M	M	A	I	N	V	K	D	V	Q	D	K	G	M	.	A	S	Y
Template Known Secondary structure				S																		T	T	T	T	T	T	T			T	T	S																								T	T	S		S											T	T	T	T	T	.
Template Predicted Secondary structure																																																																													.
Template SS confidence
	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.		.	.	.

	549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	F	A	S	A	V	P	L	L	N	Q	V	N	N	I	L	L	S	R	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence	N	A	K	I	S	G	K	V	Y	D	E	L	Y	E	N	G	N	K	K	Y	D
Template Known Secondary structure													T	G	G	G	T	S
Template Predicted Secondary structure
Template SS confidence
	645	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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