Job Description P76577 Confidence 97.80% Date Thu Jan 5 12:24:46 GMT 2012 Rank 83 Aligned Residues 138 % Identity 17% Template c3it9B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:d-alanyl-d-alanine carboxypeptidase dacc; PDBTitle: crystal structure of penicillin-binding protein 6 (pbp6)2 from e. coli in apo state Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.
Query SS confidence																																																							.	.	.
Query Sequence		A	M	I	V	V	D	H	T	D	M	R	V	R	G	W	V	G	S	V	D	L	N	D	D	S	R	F	G	H	V	D	M	V	N	S	I	R	S	P	G	S	V	L	K	P	F	V	Y	G	L	A	L	D	.	.	.	E	G	L	I	H	P	A	S	L	L	Q	D	V	P	R	R	T	G	D	Y	R	P	G	N
Query Conservation																																																							.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	W	I	L	M	D	Y	A	S	G	K	V	L	A	E	G	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	K	L	D	P	A	S	L	T	K	I	M	T	S	Y	V	V	G	Q	A	L	K	A	D	K	I	K	L	T	D	M	V	T	V	G	K	D	A	W	A	T	G	N	P	A	L
Template Known Secondary structure								T	T	T								S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S		B			G	G	G															T	T	S	S		T	T							G	G	G		S	T	T		G	G	G
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.																.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		379	380	.	.	.						.	.	.	.	.	.	390	.	.					.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.							410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure							.	.	.	.	.										.	.	.	.																		.	.	.	.	.	.
Query SS confidence							.	.	.	.	.										.	.	.	.																		.	.	.	.	.	.
Query Sequence		F	D	S	G	F	.	.	.	.	.	H	G	P	I	S	M	S	E	A	.	.	.	.	L	V	R	S	L	N	L	P	A	V	Q	V	L	E	A	Y	G	.	.	.	.	.	.	P	K	R	F	A	A	K	L	R	N	V	G	L	P	L	Y	L	P	N	G	A	A	P	N	L	S	L	I	L	G	G	A	G	A
Query Conservation							.	.	.	.	.										.	.	.	.																		.	.	.	.	.	.
Alig confidence							.	.	.	.	.										.	.	.	.																		.	.	.	.	.	.																							.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		R	G	S	S	V	M	F	L	K	P	G	D	Q	V	S	V	A	D	L	N	K	G	V	I	I	Q	S	G	N	D	A	C	I	A	L	A	D	Y	V	A	G	S	Q	E	S	F	I	G	L	M	N	G	Y	A	K	K	L	G	L	T	N	T	T	F	Q	T	V	H	.	.	.	G	L	D	A	P	G	Q	F	S
Template Known Secondary structure		T	T	S							T	T															T															S	S															T	T		T	T		B			S	S	S	.	.	.					T	T		B	B
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.				.	.	150	.	.	.	.	.	.
		444	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	E	D	M	A	A	A	Y	T	A	F	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	R	D	M	A	L	L	G	K	A	L	I	H
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions