Job Description P76577 Confidence 100.00% Date Thu Jan 5 12:24:46 GMT 2012 Rank 2 Aligned Residues 528 % Identity 25% Template c3fwlA_ PDB info PDB header:transferase, hydrolase Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: crystal structure of the full-length transglycosylase pbp1b2 from escherichia coli Resolution 3.09 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		D	G	T	P	L	W	R	F	A	D	A	D	G	I	W	R	Y	P	V	T	I	E	D	V	S	P	R	Y	L	E	A	L	I	N	Y	E	D	R	W	F	W	K	H	P	G	V	N	P	F	S	V	A	R	A	A	W	Q	D	L	T	S	G	R	V	I	S	G	G	S	T	L	T	M	Q	V	A	R	L	.	L
Query Conservation																																																																																.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	P	R	L	I	T	X	I	S	S	P	N	G	E	Q	R	L	F	V	P	R	S	G	F	P	D	L	L	V	D	T	L	L	A	T	E	D	R	H	F	Y	E	H	D	G	I	S	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	L	T	Q	Q	L	V	K	N	L	F
Template Known Secondary structure												T	T	S								G	G	G	S										T	T	S				S	S	S		G	G	G				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.																				.	.	.	250	.	.	.	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.					.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																										.	.	.	.
Query SS confidence																																										.	.	.	.
Query Sequence		D	P	H	P	K	T	F	G	G	K	I	R	Q	L	W	R	A	L	Q	L	E	W	H	L	S	K	R	E	I	L	T	L	Y	L	N	R	A	P	F	G	.	.	.	.	G	T	L	Q	G	I	G	A	A	S	W	A	Y	L	G	K	S	P	A	N	L	S	Y	S	E	A	A	M	L	A	V	L	P	Q	A	P
Query Conservation																																										.	.	.	.
Alig confidence																																										.	.	.	.
Template Conservation
Template Sequence		L	S	S	E	R	S	Y	W	R	K	A	N	E	A	Y	X	A	L	I	X	D	A	R	Y	S	K	D	R	I	L	E	L	Y	X	N	E	V	Y	L	G	Q	S	G	D	N	E	I	R	G	F	P	L	A	S	L	Y	Y	F	G	R	P	V	E	E	L	S	L	D	Q	Q	A	L	L	V	G	X	V	K	G	A
Template Known Secondary structure				S	S		S	S																T	S		T	T	T						T	T	T						S	S	S	S				S											S		G	G	G													T	T
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.												.	.	.	270	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	R	L	R	P	D	R	W	P	E	R	A	E	A	A	R	N	K	V	L	E	R	M	A	V	Q	G	V	W	S	R	E	Q	V	K	E	S	R	E	E	P	I	W	L	A	P	R	Q	M	P	Q	L	A	P	L	F	S	R	M	M	L	G	K	.	.	.	.	.	.	.	.	.	.	.	S	K	S	D	K	I
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.
Template Sequence		S	I	Y	N	P	W	R	N	P	K	L	A	L	E	R	R	N	L	V	L	R	L	L	Q	Q	Q	Q	I	I	D	Q	E	L	Y	D	X	L	S	A	R	P	V	.	.	.	.	.	.	.	I	S	P	Q	P	A	F	X	Q	L	V	R	Q	E	L	Q	A	K	L	G	D	K	V	K	D	L	S	G	V	K	I
Template Known Secondary structure						S	S	S	S													S		S	S	S		S		S	S	S	T	T	S									.	.	.	.	.	.	.		S	S																		S	T	T	T	T		S	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.								400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.						.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.
Query SS confidence																								.	.	.	.	.
Query Sequence		T	T	T	L	D	A	G	L	Q	R	R	L	E	E	L	A	Q	N	W	K	G	R	.	.	.	.	.	L	P	P	R	S	S	L	A	M	I	V	V	D	H	T	D	M	R	V	R	G	W	V	G	S	V	D	L	N	D	D	S	R	F	G	H	V	D	M	V	N	S	I	R	S	P	G	S	V	L	K	P	F
Query Conservation																								.	.	.	.	.
Alig confidence																								.	.	.	.	.																																.	.	.
Template Conservation																																																												.	.	.
Template Sequence		F	T	T	F	D	S	V	A	Q	D	A	A	E	K	A	A	V	E	G	I	P	A	L	K	K	Q	R	K	L	S	D	L	E	T	A	I	V	V	V	D	R	F	S	G	E	V	R	A	X	V	G	G	S	E	P	Q	F	A	.	.	.	G	Y	N	R	A	X	Q	A	R	R	S	I	G	S	L	A	K	P	A
Template Known Secondary structure																															S											T	T	T		B							S	S	S	S	T	T		.	.	.	S	S		T	T	T	S						G	G	G	G
Template Predicted Secondary structure																																																												.	.	.
Template SS confidence
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.				.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
		348	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.						.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.																		.	.	.	.	.											.	.
Query SS confidence											.																		.	.	.	.	.											.	.
Query Sequence		V	Y	G	L	A	L	D	E	G	.	L	I	H	P	A	S	L	L	Q	D	V	P	R	R	T	G	D	.	.	.	.	.	Y	R	P	G	N	F	D	S	G	F	.	.	H	G	P	I	S	M	S	E	A	L	V	R	S	L	N	L	P	A	V	Q	V	L	E	A	Y	G	P	K	R	F	A	A	K	L	R	N
Query Conservation											.																		.	.	.	.	.											.	.
Alig confidence											.																		.	.	.	.	.											.	.
Template Conservation
Template Sequence		T	Y	L	T	A	L	S	Q	P	K	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G	Q	V	W	S	P	Q	N	D	D	R	R	Y	S	E	S	G	R	V	X	L	V	D	A	L	T	R	S	X	N	V	P	T	V	N	L	G	X	A	L	G	L	P	A	V	T	E	T	W	I	K
Template Known Secondary structure								T	S		S	S			T	T													S	S	S								T	T					T	T	S										T	T		S
Template Predicted Secondary structure
Template SS confidence
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.												470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	G	L	P	L	Y	L	P	N	G	A	A	P	N	L	S	L	I	L	G	G	A	G	A	K	L	E	D	M	A	A	A	Y	T	A	F	A	R	H	G	K	A	G	K	L	R	L	Q	P	D	.	.	.	.	.	.	.	.	.	.	.	D	P	L	L	E	R	P	L	M	S	S	G	A	A	W	I	I	R	R
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.																																												.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.
Template Sequence		L	G	V	P	.	.	.	K	D	Q	L	H	P	V	P	A	X	L	L	G	A	L	N	L	T	P	I	E	V	A	Q	A	F	Q	T	I	A	S	G	G	N	R	A	P	L	S	A	L	R	S	V	I	A	E	D	G	K	V	L	Y	Q	S	F	P	Q	A	E	R	A	V	P	A	Q	A	A	Y	L	T	L	W
Template Known Secondary structure			T			.	.	.	G	G	G				S	T					T																		T	T	S						B	S							S	S	S														S
Template Predicted Secondary structure						.	.	.
Template SS confidence
		596	.	.	.				600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.				.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		I	M	A	D	E	A	Q	P	L	P	D	S	A	L	P	.	.	.	R	V	A	P	L	A	W	K	T	G	T	S	Y	G	Y	R	D	A	W	A	I	G	V	N	A	R	Y	V	I	G	I	W	T	G	R	P	D	G	T	P	V	V	G	Q	F	G	F	A	S	A	V	P	L	L	N	Q	V	N	N	I	L	L
Query Conservation																	.	.	.
Alig confidence																	.	.	.																																										.																				.
Template Conservation																																																													.																				.
Template Sequence		T	X	Q	Q	V	V	Q	R	G	T	G	R	Q	L	G	A	K	Y	P	N	L	H	L	A	G	K	T	G	T	T	N	N	N	V	D	T	W	F	A	G	I	D	G	S	T	V	T	I	T	W	V	G	R	D	N	N	Q	P	T	.	K	L	Y	G	A	S	G	A	X	S	I	Y	Q	R	Y	L	A	N	Q	.
Template Known Secondary structure									T	S	T	T								T	T	S										G	G	G	S									S	S										T	T					.				T	T														S	.
Template Predicted Secondary structure																																																													.																				.
Template SS confidence
		673	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.		.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	S	A	N	L	P	E	D	P	R	P	N	S	V	T	R	G	V	I	C	W	P	G	G	Q	S	L	P	E	G	D	G	N	C	R	R	R	L	A	T	W	L	L	D	G	S	Q	P	P	T	L	L	L
Query Conservation
Alig confidence		.	.																										.	.	.	.	.	.	.
Template Conservation		.	.																										.	.	.	.	.	.	.
Template Sequence		.	.	T	P	T	P	L	N	L	V	P	P	E	D	I	A	D	X	G	V	D	Y	D	G	N	F	V	.	.	.	.	.	.	.	C	S	G	G	X	R	I	L	P	V	W	T	S	D	P	Q	S	L	C	Q
Template Known Secondary structure		.	.											T	T								S	S					.	.	.	.	.	.	.	S	S			S								S		T	T
Template Predicted Secondary structure		.	.																										.	.	.	.	.	.	.
Template SS confidence
				751	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.								.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.