Job Description P76577 Confidence 100.00% Date Thu Jan 5 12:24:46 GMT 2012 Rank 14 Aligned Residues 303 % Identity 20% Template c3equB_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:penicillin-binding protein 2; PDBTitle: crystal structure of penicillin-binding protein 2 from neisseria2 gonorrhoeae Resolution 2.40 Å

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		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.							330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																																																																	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.
Query Sequence		S	K	S	D	K	I	T	T	T	L	D	A	G	L	Q	R	R	L	E	E	L	A	Q	N	W	K	G	R	L	P	P	R	S	S	L	A	M	I	V	V	D	H	T	D	M	R	V	R	G	W	V	G	S	V	D	L	N	D	D	S	R	F	G	.	.	.	.	.	.	H	V	D	M	V	N	S	I	R	S	P
Query Conservation																																																																	.	.	.	.	.	.
Alig confidence																																			.																														.	.	.	.	.	.
Template Conservation																																			.
Template Sequence		Q	N	G	K	D	I	I	L	S	L	D	Q	R	I	Q	T	L	A	Y	E	E	L	N	K	A	V	E	Y	H	Q	A	K	A	.	G	T	V	V	V	L	D	A	R	T	G	E	I	L	A	L	A	N	T	P	A	Y	D	P	N	R	P	G	R	A	D	S	E	Q	R	R	N	R	A	V	T	D	X	I	E	P
Template Known Secondary structure		B							B	S																				T	T		S		.								T	T	T		B								S				T	T	S		T	T															B
Template Predicted Secondary structure																																			.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	V	L	K	P	F	V	Y	G	L	A	L	D	E	G	L	I	H	P	A	S	L	L	Q	D	V	P	R	R	T	G	D	Y	R	P	G	N	F	D	S	G	F	H	G	P	I	S	M	S	E	A	L	V	R	S	L	N	L	P	A	V	Q	V	L	E	A	Y	G	P	K	R	F	A	A	K	L	R	N	V
Query Conservation
Alig confidence																																					.	.
Template Conservation																																					.	.
Template Sequence		G	S	A	I	K	P	F	V	I	A	K	A	L	D	A	G	K	T	D	L	N	E	R	L	N	T	Q	P	Y	K	I	G	P	S	P	.	.	V	R	D	T	H	V	Y	P	S	L	D	V	R	G	I	X	Q	K	S	S	N	V	G	T	S	K	L	S	A	R	F	G	A	E	E	X	Y	D	F	Y	H	E	L
Template Known Secondary structure		G	G	G	G												T	S	S		S	S						S					T	T			.	.				S	S			S											T										T	T	S												T
Template Predicted Secondary structure																																					.	.
Template SS confidence
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.			.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.																	.	.	.		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Query Sequence		G	L	P	L	Y	L	P	N	G	A	A	P	N	L	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	L	G	.	G	A	G	A	K	L	E	D	M	A	A	A	Y	T	A	F	A	R	H	G	K	A	G	K	L	R	L	Q	P	D	D	P	L	L	E	R	P	L	M	S	S	G	A	A
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				.
Template Conservation
Template Sequence		G	I	G	V	R	X	H	S	G	F	P	G	E	T	A	G	L	L	R	N	W	R	R	W	R	P	I	E	Q	A	T	X	S	F	G	Y	G	L	Q	L	S	L	L	Q	L	A	R	A	Y	T	A	L	T	H	D	G	V	L	L	P	L	S	F	E	K	Q	A	V	A	P	Q	G	K	R	I	F	K	E	T	A
Template Known Secondary structure		T	T	T	S					S		T	T									G	G	G											T	T		S			B														T	T	T						B	S	B			S	S								S
Template Predicted Secondary structure
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		484	.	.	.	.	.	490	.	.	.	.	.	.		.	.	.	500	.	.	.		.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520		.	.	.	.	.	.	.					.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure															.								.																		.								.	.	.	.
Query SS confidence															.								.																		.								.	.	.	.
Query Sequence		W	I	I	R	R	I	M	A	D	E	A	Q	P	.	L	P	D	S	A	L	P	.	R	V	A	P	L	A	W	K	T	G	T	S	Y	G	Y	R	D	.	A	W	A	I	G	V	N	.	.	.	.	A	R	Y	V	I	G	I	W	T	G	R	P	D	G	T	P	V	V	G	Q	F	G	F	A	S	A	V	P	L
Query Conservation															.								.																		.								.	.	.	.
Alig confidence															.								.																		.								.	.	.	.																.	.	.
Template Conservation																																																																				.	.	.
Template Sequence		R	E	V	R	N	L	X	V	S	V	T	E	P	G	G	T	G	T	A	G	A	V	D	G	F	D	V	G	A	K	T	G	T	A	R	K	N	K	H	V	A	T	F	I	G	F	A	P	A	K	N	P	R	V	I	V	A	V	T	I	D	E	P	T	A	H	.	.	.	G	Y	Y	G	G	V	V	A	G	P	P
Template Known Secondary structure										T	T	T	S	T	T	S	S		G	G	G			T	T	S																							S	T	T	S														S	S	.	.	.								T
Template Predicted Secondary structure																																																																				.	.	.
Template SS confidence
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.				.	.	.	.	.	.	540	.	.	.	.
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	Q	V	N	N	I	L	L	S	R	S	A	N	L	P	E	D	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	K	K	I	X	G	G	S	L	N	I	L	G	I	S	P	T	K	P
Template Known Secondary structure													T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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