Job Description P76577 Confidence 96.62% Date Thu Jan 5 12:24:46 GMT 2012 Rank 99 Aligned Residues 222 % Identity 17% Template c2qmiH_ PDB info PDB header:hydrolase Chain: H: PDB Molecule:pbp related beta-lactamase; PDBTitle: structure of the octameric penicillin-binding protein2 homologue from pyrococcus abyssi Resolution 2.20 Å

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		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.				.	.	.
Predicted Secondary structure																																			.	.																																								.	.	.
Query SS confidence																																			.	.																																								.	.	.
Query Sequence		R	R	L	E	E	L	A	Q	N	W	K	G	R	L	P	P	R	S	S	L	A	M	I	V	V	D	H	T	D	M	R	V	R	.	.	G	W	V	G	S	V	D	L	N	D	D	S	R	F	G	H	V	D	M	V	N	S	I	R	S	P	G	S	V	L	K	P	F	V	Y	G	L	A	L	.	.	.	D	E	G
Query Conservation																																			.	.																																								.	.	.
Alig confidence																				.								.	.						.	.																	.	.	.	.																				.	.	.
Template Conservation																				.								.	.																								.	.	.	.
Template Sequence		G	K	L	E	S	F	I	V	E	K	M	A	E	R	K	V	P	G	.	I	S	I	S	I	I	K	.	.	D	G	D	V	V	Y	A	K	G	F	G	Y	R	N	V	E	A	R	L	P	S	T	P	.	.	.	.	E	T	I	Y	G	I	G	S	I	T	K	S	F	T	A	L	A	I	M	K	L	V	E	E	G
Template Known Secondary structure															T	T				.								.	.	T	T													T	T	T	T					T	.	.	.	.	T		B				G	G	G															T	T
Template Predicted Secondary structure																				.								.	.																								.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.					.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	H	P	A	S	L	L	Q	D	V	P	R	R	T	G	D	Y	R	P	G	N	F	D	S	G	F	H	G	P	I	S	M	S	E	A	L	V	R	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.					.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.					.
Template Sequence		G	L	S	L	D	D	P	V	E	.	.	.	.	.	.	.	K	F	V	N	.	I	K	L	R	P	F	G	E	P	V	T	V	H	H	L	L	T	H	S	S	G	I	P	S	L	G	Y	A	E	A	F	I	D	G	M	V	G	G	D	N	W	L	P	V	S	T	P	E	E	T	I	A	F	A	R	D	M	E	K
Template Known Secondary structure		S			T	T	S	B	G	G	.	.	.	.	.	.	.	G	T	S	S	.	S				G	G	G				B						T	T		S	S														T	T	T		S							S								G	G	G	G	G	G
Template Predicted Secondary structure											.	.	.	.	.	.	.					.
Template SS confidence
		77	.	.	80	.	.	.	.	.								.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
															398	.	400	.	.				.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.						420	.	.																									.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																		.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																		.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	N	L	P	A	V	.	.	.	Q	V	L	E	A	Y	G	P	K	R	F	A	A	K	L	R	N	.	.	.	.	.	V	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	Y	L	P	N	G	A	A	P
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																		.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.																		.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	A	V	A	K	P	G	E	R	F	F	Y	L	N	T	G	Y	V	L	L	G	K	I	I	E	K	V	S	G	V	S	Y	E	E	Y	I	K	K	K	I	L	E	P	L	G	M	N	R	S	Y	F	F	K	E	E	V	E	K	D	K	D	V	A	M	G	Y	I	L	D	K	E	G	R	L	V	P	Q	P	F	P
Template Known Secondary structure		G			S		T	T	T																					S	S										T	T	G	G	G	T		T	T		B							T	T	S	S	S	B								T	T	S
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	S	L	I	L	G	G	A	G	A	K	L	E	D	M	A	A	A	Y	T	A	F	A	R	H	G	K	A	G	K	L	R	L	Q	P	D	D	P	L	L	E	R	P	L	M	S	S	G	A	A	W	I	I	R	R	I	M	A	D	E	A	Q	P	L	P	D	S	A	L	P	R	V	A	P	L	A	W	K	T
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.
Template Sequence		Y	G	I	T	A	D	G	G	L	L	S	S	V	L	D	L	A	K	Y	L	K	M	Y	I	E	R	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	V	S	K	E	.	.	.	Y	I	E	K	M	E	T	S	Y	I	K	V	P	W	E	I	F	G	G	E	G	Y	G	Y	G	L	I	I
Template Known Secondary structure		T	T			T	T	T																		T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S				.	.	.						T	S						S			S	S	S						S	S	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.																.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		513		.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		G	.	T	S	Y	G	Y	R	D	A	W	A	I	G	V	N	A	R	Y	V	I	G	I	W	T
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		Y	P	N	F	L	G	E	K	L	V	G	H	S	G	S	V	G	M	Y	T	G	Y	I	G	Y
Template Known Secondary structure						T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions