Job Description P76577 Confidence 100.00% Date Thu Jan 5 12:24:46 GMT 2012 Rank 26 Aligned Residues 235 % Identity 12% Template c2iwdA_ PDB info PDB header:antibiotic resistance Chain: A: PDB Molecule:methicillin resistance mecr1 protein; PDBTitle: oxacilloyl-acylated mecr1 extracellular antibiotic-sensor2 domain. Resolution 2.4 Å

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		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	I	T	T	T	L	D	A	G	L	Q	R	R	L	E	E	L	A	Q	N	W	K	G	R	L	P	P	R	S	S	L	A	M	I	V	V	D	H	T	D	M	R	V	R	G	W	V	G	S	V	D	L	N	D	D	S	R	F	G	H	V	D	M	V	N	S	I	R	S	P	G	S	V	L	K	P	F	V	Y
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	K	Y	E	T	N	V	S	Y	K	K	L	N	Q	L	A	P	Y	F	K	G	.	.	.	.	.	.	.	.	F	D	G	S	F	V	L	Y	N	E	R	E	Q	A	Y	S	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	P	E	S	K	Q	R	Y	S	P	N	T	Y	K	I	Y	L	A
Template Known Secondary structure			B											G	G	G	G	G	G	G	T	T	.	.	.	.	.	.	.	.	S									T	T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	S						B							T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360									.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.															.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	A	L	D	E	G	L	I	H	P	A	S	L	L	Q	D	V	P	R	R	T	G	D	Y	R	P	G	N	F	D	S	G	F	H	G	P	I	S	M	S	E	A	L	V	R	S	L	N	L	P	A	V	Q	V	L	E	A	Y	G	P	K	R	F	A	A	K	L	R	N	V	G	L	P	L	Y	L	P	N	G
Query Conservation
Alig confidence																						.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.
Template Sequence		L	M	A	F	D	Q	N	L	L	S	L	N	H	T	E	Q	Q	W	D	K	.	.	.	.	.	.	H	Q	Y	P	F	K	E	W	N	Q	D	Q	N	L	N	S	S	M	K	Y	S	V	N	W	Y	Y	E	N	L	N	K	H	L	R	Q	D	E	V	K	S	Y	L	D	L	I	E	Y	G	N	E	E	I	S	G
Template Known Secondary structure							T	T	S	S	B	T	T	B			B					.	.	.	.	.	.				S	S	G	G	G	S	S		B								T	T												S													T		T	T					S
Template Predicted Secondary structure																						.	.	.	.	.	.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.							.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	P	N	L	S	L	I	L	G	G	A	G	A	K	L	E	D	M	A	A	A	Y	T	A	F	A	R	H	G	K	A	G	K	L	R	L	Q	P	D	D	P	L	L	E	R	P	L	M	S	S	G	A	A	W	I	I	R	R	I	M	A	D	E	A	Q	P	L	P	D	S	A	L	P	R	V	A	P	L	A
Query Conservation
Alig confidence					.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation					.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Sequence		N	E	N	.	.	Y	W	N	E	S	S	L	K	I	S	A	I	E	Q	V	N	L	L	K	N	M	K	Q	H	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	H	F	D	N	K	A	I	E	K	V	E	N	S	M	T	L	K	Q	K	D	T	Y	.	.	.	.	.	.	.	.	K	Y	V
Template Known Secondary structure			T	T	.	.	T	T	S	S	S	S																	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S												T						S	S		.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template SS confidence
		473	.	.			.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500																	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.									.	.	.
		510	.	.	.	.	.	.				.	.	.	520	.	.	.	.	.	.					.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
Predicted Secondary structure									.	.	.											.	.	.	.
Query SS confidence									.	.	.											.	.	.	.
Query Sequence		W	K	T	G	T	S	Y	.	.	.	G	Y	R	D	A	W	A	I	G	V	.	.	.	.	N	A	R	Y	V	I	G	I	W	T	G	R	P	D	G	T	P	V	V	G	Q	F	G	F	A	S	A	V	P	L	L	N	Q	V	N	N	I	L
Query Conservation									.	.	.											.	.	.	.
Alig confidence									.	.	.											.	.	.	.																	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.
Template Sequence		G	K	T	G	T	G	I	V	N	H	K	E	A	N	G	W	F	V	G	Y	V	E	T	K	D	N	T	Y	Y	F	A	T	H	L	K	G	E	D	N	A	.	.	.	.	.	.	N	G	E	K	A	Q	Q	I	S	E	R	I	L	K	E	M
Template Known Secondary structure										T	T														S	S												S	S		B	.	.	.	.	.	.	S															T
Template Predicted Secondary structure																																										.	.	.	.	.	.
Template SS confidence
		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.							.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions