Job Description P76577 Confidence 100.00% Date Thu Jan 5 12:24:46 GMT 2012 Rank 6 Aligned Residues 396 % Identity 19% Template c2bg1A_ PDB info PDB header:peptidoglycan Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: active site restructuring regulates ligand recognition in2 classa penicillin-binding proteins (pbps) Resolution 1.9 Å

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		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	P	D	R	W	P	E	R	A	E	A	A	R	N	K	V	L	E	R	M	A	V	Q	G	V	W	S	R	E	Q	V	K	E	S	R	E	E	P	I	W	L	A	P	R	Q	M	P	Q	L	A	P	L	F	S	R	M	M	L	G	K	S	K	S	D	K	I	T	T	T	L	D	A	G	L	Q	R	R	L	E
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.																				.
Template Sequence		T	Y	D	Y	L	Y	F	T	T	L	A	E	A	Q	E	R	M	Y	D	Y	L	A	Q	R	D	N	V	S	A	K	E	L	.	.	.	.	.	.	.	.	.	.	K	N	E	A	T	Q	K	F	Y	R	D	L	A	A	K	E	I	E	N	.	G	G	Y	K	I	T	T	T	I	D	Q	K	I	H	S	A	M	Q
Template Known Secondary structure																										T	T			T	T	T	T	.	.	.	.	.	.	.	.	.	.	S																		T	.	S
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.																				.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140											.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.				300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.		.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																.	.	.																																																		.
Query SS confidence																.	.	.																																																		.
Query Sequence		E	L	A	Q	N	W	K	G	R	L	P	P	R	S	.	.	.	S	L	A	M	I	V	V	D	H	T	D	M	R	V	R	G	W	V	G	S	V	D	L	N	D	D	S	R	F	G	H	V	D	M	V	N	S	I	R	S	P	G	S	V	L	K	P	F	V	.	Y	G	L	A	L	D	E	G	L	I	H	P	A
Query Conservation																.	.	.																																																		.
Alig confidence																.	.	.																												.	.	.																				.
Template Conservation																																														.	.	.
Template Sequence		S	A	V	A	D	Y	G	Y	L	L	D	D	G	T	G	R	V	E	V	G	N	V	L	M	D	N	Q	T	G	A	I	L	G	F	V	G	G	R	N	Y	Q	E	N	Q	.	.	.	N	N	H	A	F	D	T	K	R	S	P	A	S	T	T	K	P	L	L	A	Y	G	I	A	I	D	Q	G	L	M	G	S	E
Template Known Secondary structure								G	G	G	G			S	S	S	S										T	T	T		B								S		T	T	T			.	.	.			T	T	T	T			B			G	G	G	G					T							T	T	S			T	T
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.				.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.			.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.																																	.	.
Query SS confidence																				.																																	.	.
Query Sequence		S	L	L	Q	D	V	P	R	R	T	G	D	Y	R	P	G	N	F	.	D	S	G	F	H	G	P	I	S	M	S	E	A	L	V	R	S	L	N	L	P	A	V	Q	V	L	E	A	Y	G	P	K	.	.	R	F	A	A	K	L	R	N	V	G	L	P	L	Y	L	P	N	G	A	A	P	N	L	S	L	I	L
Query Conservation																				.																																	.	.
Alig confidence																				.																																	.	.																			.	.	.	.
Template Conservation																																																																									.	.	.	.
Template Sequence		T	I	L	S	N	Y	P	T	N	F	A	N	G	N	P	I	M	Y	A	N	S	K	G	T	G	M	M	T	L	G	E	A	L	N	Y	S	W	N	I	P	A	Y	W	T	Y	R	M	L	R	E	N	G	V	D	V	K	G	Y	M	E	K	M	G	Y	E	I	P	E	Y	G	I	.	.	.	.	E	S	L	P	M
Template Known Secondary structure							S			B		T	T	S		B			B	T	T	B															T		S													T	T										T	T				S					.	.	.	.	T	T	G	G	G
Template Predicted Secondary structure																																																																									.	.	.	.
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.					.	.	.	.	.
		439		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.												470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure			.																															.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Query SS confidence			.																															.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Query Sequence		G	.	G	A	G	A	K	L	E	D	M	A	A	A	Y	T	A	F	A	R	H	G	K	A	G	K	L	R	L	Q	P	D	.	.	.	.	.	.	.	.	.	.	.	D	P	L	L	E	R	P	L	M	S	S	G	A	A	W	I	I	R	R	I	M	A	D	E	A	Q	P	L	P	D	S	A	L	P	.	.	.
Query Conservation			.																															.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Alig confidence			.																															.	.	.	.	.	.	.	.	.	.	.																																			.	.	.
Template Conservation
Template Sequence		G	G	G	I	E	V	T	V	A	Q	H	T	N	G	Y	Q	T	L	A	N	N	G	V	Y	H	Q	K	H	V	I	S	K	I	E	A	A	D	G	R	V	V	Y	E	Y	Q	D	K	P	V	Q	V	Y	S	K	A	T	A	T	I	M	Q	G	L	L	R	E	V	L	S	S	R	V	T	T	T	F	K	S	N	L
Template Known Secondary structure		T	T	T			B														T	T	T						B	S							T	T	S														S																		T		S	S
Template Predicted Secondary structure
Template SS confidence
		557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.
									504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570				.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																																																				.	.	.
Query SS confidence		.	.	.	.	.	.	.																																																																				.	.	.
Query Sequence		.	.	.	.	.	.	.	R	V	A	P	L	A	W	K	T	G	T	S	Y	G	Y	R	D	A	W	A	I	G	V	N	A	R	Y	V	I	G	I	W	T	G	R	P	D	G	T	P	V	V	G	Q	F	G	F	A	S	A	V	P	L	L	N	Q	V	N	N	I	L	L	S	R	S	A	N	.	.	.	L	P	E
Query Conservation		.	.	.	.	.	.	.																																																																				.	.	.
Alig confidence		.	.	.	.	.	.	.																																																																				.	.	.
Template Conservation
Template Sequence		T	S	L	N	P	T	L	A	N	A	D	W	I	G	K	T	G	T	T	N	Q	D	E	N	M	W	L	M	L	S	T	P	R	L	T	L	G	G	W	I	G	H	D	D	N	H	S	L	S	Q	Q	A	G	Y	S	N	N	S	N	Y	M	A	H	L	V	N	A	I	Q	Q	A	S	P	S	I	W	G	N	E	R
Template Known Secondary structure										T	S										T	T		S									S	S										T	T						T	T	T	T	T	T																	S	T	T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		637	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.							600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.
Query Sequence		D	P	R	P	N	S	V	T	R	G	V	I	C	W	P	G	G	Q	S	L	P	E	G	D	G	N	.	.	.	.	.	.	C	R	R	R	L	A	T	W	L	L	D	G	S	Q	P	P	T	L	L	L
Query Conservation																												.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.
Template Conservation
Template Sequence		F	A	L	D	P	S	V	V	K	S	E	V	L	K	S	T	G	Q	K	P	G	K	V	S	V	E	G	K	E	V	E	V	T	G	S	T	V	T	S	Y	W	A	N	K	S	G	A	P	A	T	S	Y
Template Known Secondary structure						T	T								T	T	T	S	S	B							S	S	S														S	S	S	S		S		B			S
Template Predicted Secondary structure
Template SS confidence
		717	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.