Return to main results Retrieve Phyre Job Id

Job DescriptionP76577
Confidence98.40%DateThu Jan 5 12:24:46 GMT 2012
Rank69Aligned Residues138
% Identity18%Templatec2bcfA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:probable d-alanyl-d-alanine carboxypeptidase PDBTitle: crystal structure of a evolved putative penicillin-binding2 protein homolog, rv2911, from mycobacterium tuberculosis.
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   302.......310.........320.........330.........340.........350.........360.........370.........380.
Predicted Secondary structure 







































Query SS confidence 















































































Query Sequence  AMIVVDHTDMRVRGWVGSVDLNDDSRFGHVDMVNSIRSPGSVLKPFVYGLALDEGLIHPASLLQDVPRRTGDYRPGNFDS
Query Conservation 
 



  

 


 

             
   
 
 



 


 





 
 


 
 
 
 
       
 
 
 
Alig confidence 

















...............









































...

Template Conservation 
  
 
  

 

   
 ...............      

 


 

   

 
 
   
              ...  
Template Sequence  TWIVADLDSGQVLAGRDQ. . . . . . . . . . . . . . . NVAHPPASTIKVLLALVALDELDLNSTVVADVADTQAECNCV. . . GV
Template Known Secondary structure  TTT
ST...............T

B

GGG

TT


TGGG

SS


...

Template Predicted Secondary structure 






...............


















...

Template SS confidence 















































































   44.....50.........60. ........70.........80.........90.........100... ..
 
   382.......390.... .....400......... 410.........420.........430.........440.........450..
Predicted Secondary structure 

....


.....





















Query SS confidence 












. . . .














. . . . .










































Query Sequence  GFHGPISMSEALV. . . . RSLNLPAVQVLEAYG. . . . . PKRFAAKLRNVGLPLYLPNGAAPNLSLILGGAGAKLEDMAAAY
Query Conservation     
 

   

 .... 
 

 

 
   

.....       
   

          






   






 

Alig confidence 












....














.....












.




























Template Conservation    
   

 


  

  
 
 

  

   

       

  
  


.  
   
  

      
 


 


 
 
Template Sequence  KPGRSYTVRQLLDGLLLVSGNDAANTLAHXLGGQDVTVAKXNAKAATLGA. TSTHATTPSGLDGPGGSGASTAHDLVVIF
Template Known Secondary structure 
TT
S

TT
T
.TT
B
SSSSSS
BTTBS
BB
Template Predicted Secondary structure 















.

















Template SS confidence 















































































   106...110.........120.........130.........140.........150..... ....160.........170.........180....
 
   453.....
Predicted Secondary structure 

Query SS confidence 





Query Sequence  TAFARH
Query Conservation 
 


 
Alig confidence 





Template Conservation        
Template Sequence  RAAXAN
Template Known Secondary structure  S
Template Predicted Secondary structure 

Template SS confidence 





   185....190
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions