Job Description P76577 Confidence 98.32% Date Thu Jan 5 12:24:46 GMT 2012 Rank 72 Aligned Residues 211 % Identity 18% Template c1z6fA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:penicillin-binding protein 5; PDBTitle: crystal structure of penicillin-binding protein 5 from e. coli in2 complex with a boronic acid inhibitor Resolution 1.60 Å

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		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.				.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																																																										.	.	.
Query SS confidence																																																										.	.	.
Query Sequence		P	P	R	S	S	L	A	M	I	V	V	D	H	T	D	M	R	V	R	G	W	V	G	S	V	D	L	N	D	D	S	R	F	G	H	V	D	M	V	N	S	I	R	S	P	G	S	V	L	K	P	F	V	Y	G	L	.	.	.	A	L	D	E	G	L	I	H	P	A	S	L	L	Q	D	V	P	R	R	T	G
Query Conservation																																																										.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Q	I	D	A	E	S	Y	I	L	I	D	Y	N	S	G	K	V	L	A	E	Q	N	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	R	R	D	P	A	S	L	T	K	M	M	T	S	Y	V	I	G	Q	A	M	K	A	G	K	F	K	E	T	D	L	V	T	I	G	N	D	A	W	A
Template Known Secondary structure					S									T	T	T								S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T			B			G	G	G															T	T	S			T	T							G	G	G		G
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.																.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		373	.	.	.	.	.	.	380	.						.	.	.	.	.	.	.	.	390	.	.					.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.							410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.												.	.	.	.																		.	.	.	.	.	.
Query SS confidence											.	.	.	.	.												.	.	.	.																		.	.	.	.	.	.
Query Sequence		D	Y	R	P	G	N	F	D	S	.	.	.	.	.	G	F	H	G	P	I	S	M	S	E	A	.	.	.	.	L	V	R	S	L	N	L	P	A	V	Q	V	L	E	A	Y	G	.	.	.	.	.	.	P	K	R	F	A	A	K	L	R	N	V	G	L	P	L	Y	L	P	N	G	A	A	P	N	L	S	L	I
Query Conservation											.	.	.	.	.												.	.	.	.																		.	.	.	.	.	.
Alig confidence											.	.	.	.	.												.	.	.	.																		.	.	.	.	.	.														.	.	.	.	.
Template Conservation																																																																			.	.	.	.	.
Template Sequence		T	G	N	P	V	F	K	G	S	S	L	M	F	L	K	P	G	M	Q	V	P	V	S	Q	L	I	R	G	I	N	L	Q	S	G	N	D	A	C	V	A	M	A	D	F	A	A	G	S	Q	D	A	F	V	G	L	M	N	S	Y	V	N	A	L	G	L	.	.	.	.	.	K	N	T	H	F	Q	T	V	H	G
Template Known Secondary structure		G	G		G	G	G	T	T	S							T	T														T	T															S	S															T	T		.	.	.	.	.	S	S		B			S	S	S
Template Predicted Secondary structure																																																																			.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.						.	.	.	.	.	.	.	150	.	.
		438			.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.		.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.			.	.	510	.	.
Predicted Secondary structure			.	.																					.																																																		.	.
Query SS confidence			.	.																					.																																																		.	.
Query Sequence		L	.	.	G	G	A	G	A	K	L	E	D	M	A	A	A	Y	T	A	F	A	R	H	.	G	K	A	G	K	L	R	L	Q	P	D	D	P	L	L	E	R	P	L	M	S	S	G	A	A	W	I	I	R	R	I	M	A	D	E	A	Q	P	L	P	D	S	A	L	P	R	V	A	P	.	.	L	A	W	K	T
Query Conservation			.	.																					.																																																		.	.
Alig confidence			.	.																					.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	A	D	G	Q	Y	S	S	A	R	D	M	A	L	I	G	Q	A	L	I	R	D	V	P	N	E	Y	S	I	Y	K	E	K	E	F	T	F	N	G	I	R	Q	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	N	G	L	L	W	D	N	S	L	N	V	D	G	I	K	T
Template Known Secondary structure					T	T		B	B																					G	G	G	G							T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		G	G	G	G		T	T	S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.																			.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		513	.	.	.			.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		G	T	S	Y	.	.	G	Y	R	D	A	W	A	I	G	V	N	A	R	Y	V	I	G	I	W	T	G	R	P	D	G	T	P	V
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		G	H	T	D	K	A	G	Y	N	L	V	A	S	A	T	E	G	Q	M	R	L	I	S	A	V	M	G	G	R	T	F	K	G	R
Template Known Secondary structure					T	T	T											T	T													S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions