Job Description P76577 Confidence 98.34% Date Thu Jan 5 12:24:46 GMT 2012 Rank 70 Aligned Residues 252 % Identity 14% Template c1xp4C_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:d-alanyl-d-alanine carboxypeptidase; PDBTitle: crystal structure of a peptidoglycan synthesis regulatory2 factor (pbp3) from streptococcus pneumoniae Resolution 2.80 Å

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		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370			.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.																	.	.
Query SS confidence																																																							.	.	.																	.	.
Query Sequence		A	M	I	V	V	D	H	T	D	M	R	V	R	G	W	V	G	S	V	D	L	N	D	D	S	R	F	G	H	V	D	M	V	N	S	I	R	S	P	G	S	V	L	K	P	F	V	Y	G	L	A	L	D	.	.	.	E	G	L	I	H	P	A	S	L	L	Q	D	V	P	R	R	.	.	T	G	D	Y	R	P
Query Conservation																																																							.	.	.																	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.																	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	A	I	A	V	E	A	N	T	G	K	I	L	Y	E	K	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	Q	P	V	E	I	A	S	I	T	K	L	I	T	V	Y	L	V	Y	E	A	L	E	N	G	S	I	T	L	S	T	P	V	D	I	S	D	Y	P	Y	Q	L	T	T	N	S	E
Template Known Secondary structure		S						T	T	T	T							S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S					G	G	G	G															T	S	S		T	T															S	S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.																.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.					.	.	.	.	.	400	.	.	.	.	.	.	.	.	.							410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.																.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.																.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Query Sequence		G	N	F	D	S	G	F	H	G	P	I	S	M	S	E	A	L	V	.	.	.	.	R	S	L	N	L	P	A	V	Q	V	L	E	A	Y	G	.	.	.	.	.	.	P	K	R	F	A	A	K	L	R	N	V	G	L	P	L	Y	L	P	N	G	A	A	P	N	L	S	L	I	L	.	.	.	.	.	.	.	.
Query Conservation																				.	.	.	.																.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.																.	.	.	.	.	.															.	.	.	.	.											.	.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		A	S	N	I	P	X	E	A	R	N	Y	T	V	E	E	L	L	E	A	T	L	V	S	S	A	N	S	A	A	I	A	L	A	E	K	I	A	G	S	E	K	D	F	V	D	X	X	R	A	K	L	L	E	W	G	I	Q	.	.	.	.	.	D	A	T	V	V	N	T	T	G	L	N	N	E	T	L	G	D	N
Template Known Secondary structure		S	S					T	T																														S	S															T	T			.	.	.	.	.	S		B				S	S				G	G	G	S	T	T
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.						.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
										439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.		.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																					.
Query SS confidence		.	.	.	.	.	.	.	.																					.
Query Sequence		.	.	.	.	.	.	.	.	G	G	A	G	A	K	L	E	D	M	A	A	A	Y	T	A	F	A	R	H	.	G	K	A	G	K	L	R	L	Q	P	D	D	P	L	L	E	R	P	L	M	S	S	G	A	A	W	I	I	R	R	I	M	A	D	E	A	Q	P	L	P	D	S	A	L	P	R	V	A	P	L	A
Query Conservation		.	.	.	.	.	.	.	.																					.
Alig confidence		.	.	.	.	.	.	.	.																					.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	Y	P	G	S	K	K	D	E	E	N	K	L	S	A	Y	D	V	A	I	V	A	R	N	L	I	K	K	Y	P	Q	V	L	E	I	T	K	K	P	S	S	T	F	A	G	X	T	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	S	T	N	Y	X	L	E	G	X	P	A	Y	R	G	G	F	D	G
Template Known Secondary structure		S		T	T			T	T																						G	G	G					T		S					T	T			.	.	.	.	.	.	.	.	.	.	.	.	.				S		T	T	S	T	T	S	T	T			T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.														.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		510	.	.	.	.	.	.			.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		W	K	T	G	T	S	Y	.	.	G	Y	R	D	A	W	A	I	G	V	N	A	R	Y	V	I	G	I	W	T	G	R	P	D	G	T	P	V	V	G	Q	F	G	F	A	S	A	V	P	L	L	N	Q	V	N	N	I	L	L	S	R	S	A	N	L	P	E	D	P	R	P	N	S	V	T	R	G	V	I	C	W
Query Conservation									.	.
Alig confidence									.	.																											.	.	.	.	.
Template Conservation																																					.	.	.	.	.
Template Sequence		L	K	T	G	T	T	D	K	A	G	E	S	F	V	G	T	T	V	E	K	G	X	R	V	I	T	V	V	L	N	A	D	H	Q	D	.	.	.	.	.	N	N	P	Y	A	R	F	T	A	T	S	S	L	X	D	Y	I	S	S	T	F	T	L	R	K	I	V	Q	Q	G	D	A	Y	Q	D	S	K	A	P	V
Template Known Secondary structure								T	T	T											T	T														S	.	.	.	.	.	S		T	T																									T	T
Template Predicted Secondary structure																																					.	.	.	.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.						.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		588	.	590	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	D	G	K
Template Known Secondary structure		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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