Job Description P76577 Confidence 100.00% Date Thu Jan 5 12:24:46 GMT 2012 Rank 24 Aligned Residues 292 % Identity 15% Template c1mwuA_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:penicillin-binding protein 2a; PDBTitle: structure of methicillin acyl-penicillin binding protein 2a2 from methicillin resistant staphylococcus aureus strain3 27r at 2.60 a resolution. Resolution 2.60 Å

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		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.																		.	.	.	330
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	S	D	K	I	T	T	T	L	D	A	G	L	Q	R	R	L	E	E	L	A	Q	N	W	K	G	R	L	P	P	R	S	S	L	A	M	I	V	V	D	H	T	D	M	R	V	R	G	W	V	G	S	V	D	L	N	D	D	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	F	G	H
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.
Template Sequence		D	G	K	D	I	Q	L	T	I	D	A	K	V	Q	K	S	I	Y	N	N	M	.	.	.	.	.	.	.	.	K	N	D	Y	G	S	G	T	A	I	H	P	Q	T	G	E	L	L	A	L	V	S	T	P	S	Y	D	V	Y	P	F	M	Y	G	M	S	N	E	E	Y	N	K	L	T	E	D	K	K	E	P	L
Template Known Secondary structure								B	S												T	T	.	.	.	.	.	.	.	.	T	T	S									T	T	T		B								S				S																			T	T		T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340									.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370							.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.
Query Sequence		V	D	M	V	N	S	I	R	S	P	G	S	V	L	K	P	F	V	Y	G	L	A	L	D	E	G	L	I	H	P	A	S	L	L	Q	D	V	P	R	R	.	.	.	.	.	.	T	G	D	Y	R	P	G	N	F	D	S	G	F	H	G	P	I	S	M	S	E	A	L	V	R	S	L	N	L	P	A	V	Q	V
Query Conservation																																										.	.	.	.	.	.
Alig confidence													.																													.	.	.	.	.	.											.
Template Conservation													.																																													.
Template Sequence		L	N	K	F	Q	I	T	T	S	P	G	.	T	Q	K	I	L	T	A	M	I	G	L	N	N	K	T	L	D	D	K	T	S	Y	K	I	D	G	K	G	W	Q	K	D	K	S	W	G	G	Y	N	V	T	R	Y	E	.	V	V	N	G	N	I	D	L	K	Q	A	I	E	S	S	D	N	I	F	F	A	R	V
Template Known Secondary structure		S		T	T	T	S		B				.														T	S			T	T							S	S				S	S	G	G	G	T	T						S	S	.														T	T
Template Predicted Secondary structure													.																																													.
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.		.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.																	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	E	A	Y	G	P	K	R	F	A	A	K	L	R	N	V	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	Y	L	P	N	G	A	A	P	N	L	S	L	I	L	G	G	A	G	A	K	L	E	D	M	A	A	A	Y	T	A	F	A	R	H	G	K	A	G	K	L	R	L	Q	P
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	E	L	G	S	K	K	F	E	K	G	M	K	K	L	G	V	G	E	D	I	P	S	D	Y	P	F	Y	N	A	Q	I	S	N	N	L	D	N	E	I	L	L	A	D	S	G	Y	G	Q	G	E	I	L	I	N	P	V	Q	I	L	S	I	Y	S	A	L	E	N	N	G	N	I	N	A	P	H	L	L	K
Template Known Secondary structure																		T	T	T	S				S	S	S						B	S				T	T	S								T	T	T		S	S		B	B											G	G	G	T	T	T						B		B	S
Template Predicted Secondary structure
Template SS confidence
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
		469	470	.	.	.			.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.		.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.				.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure							.	.																															.																								.	.	.
Query SS confidence							.	.																															.																								.	.	.
Query Sequence		D	D	P	L	L	.	.	E	R	P	L	M	S	S	G	A	A	W	I	I	R	R	I	M	A	D	E	A	Q	P	L	P	D	S	A	L	P	.	R	V	A	P	L	A	W	K	T	G	T	S	Y	G	Y	R	D	A	W	A	I	G	V	.	.	.	N	A	R	Y	V	I	G	I	W	T	G	R	P	D	G	T
Query Conservation							.	.																															.																								.	.	.
Alig confidence							.	.																															.														.										.	.	.
Template Conservation																																																					.
Template Sequence		D	T	K	N	K	V	W	K	K	N	I	I	S	K	E	N	I	N	L	L	T	D	G	M	Q	Q	V	V	N	K	T	H	K	E	D	I	Y	R	S	Y	A	N	L	I	G	K	S	G	T	A	E	.	L	Q	I	G	W	F	I	S	Y	D	K	D	N	P	N	M	M	M	A	I	N	V	K	D	V	Q	D	K
Template Known Secondary structure		S	S							S		S	S																		T	T	T	T	T	T	T			T	T	S											.											T	T	S		S											T	T	T
Template Predicted Secondary structure																																																					.
Template SS confidence
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.		.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	V	G	Q	F	G	F	A	S	A	V	P	L	L	N	Q	V	N	N	I	L	L	S	R	S	A	N	L	P	E	D	P
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	G	M	A	S	Y	N	A	K	I	S	G	K	V	Y	D	E	L	Y	E	N	G	N	K	K	Y	D	I	D
Template Known Secondary structure		.	.	.	.	.	T	T																T	G	G	G	T	S				T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions