Job Description P75892 Confidence 100.00% Date Thu Jan 5 12:15:42 GMT 2012 Rank 1 Aligned Residues 392 % Identity 39% Template c3qe7A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:uracil permease; PDBTitle: crystal structure of uracil transporter--uraa Resolution 2.78 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	P	D	E	R	L	P	F	A	Q	T	A	V	M	G	V	Q	H	A	V	A	M	F	G	A	T	V	L	M	P	I	L	M	G	L	D	P	N	L	S	I	L	M	S	G	I	G	T	L	L	F	F	F	I	T	G	G	R	V	P	S	Y	L	G	S	S	A	A	F	V	G	V	V	I	A	A	T	G	F
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		I	G	V	S	E	R	P	P	L	L	Q	T	I	P	L	S	L	Q	H	L	F	A	M	F	G	A	T	V	L	V	P	V	L	F	H	I	N	P	A	T	V	L	L	F	N	G	I	G	T	L	L	Y	L	F	I	C	K	G	K	I	P	A	Y	L	G	S	S	F	A	F	I	S	P	V	L	L	L	L	P	.
Template Known Secondary structure		B		T	T																													T	T	T	S																				T	T	T										G	G	G								G	G	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.									.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.
Query Sequence		N	G	Q	G	I	N	P	N	I	S	I	A	L	G	G	I	I	A	C	G	L	V	Y	T	V	I	G	L	V	V	M	K	I	G	T	R	W	I	E	R	L	M	P	P	V	V	T	G	A	V	V	M	A	I	G	L	N	L	A	P	I	A	V	K	S	V	S	A	S	A	F	.	.	.	.	.	.	.	.	D
Query Conservation																																																																									.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																																		.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	L	G	Y	E	V	A	L	G	G	F	I	M	C	G	V	L	F	C	L	V	S	F	I	V	K	K	A	G	T	G	W	L	D	V	L	F	P	P	A	A	M	G	A	I	V	A	V	I	G	L	E	L	A	G	V	A	A	G	M	A	G	L	L	P	A	E	G	Q	T	P	D	S	K	T
Template Known Secondary structure		.	.	.	.	.	.	G																									T	T		S																																T	S	S		B	T	T	B
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	M	A	V	M	T	V	L	C	I	G	L	V	A	V	F	T	R	G	M	I	Q	R	L	L	I	L	V	G	L	I	V	A	C	L	L	Y	G	V	M	T	N	V	L	G	L	G	K	A	V	D	F	T	L	V	S	H	A	A	W	F	G	L	P	H	F	S	T	P	A	F	N	G	Q	A	M	M	L	I
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.
Template Sequence		I	I	I	S	I	T	T	L	A	V	T	V	L	G	S	V	L	F	R	G	F	L	A	I	I	P	I	L	I	G	V	L	V	G	Y	A	L	S	F	A	M	G	I	.	.	.	.	.	.	.	V	D	T	T	P	I	I	N	A	H	W	F	A	L	P	T	L	Y	T	P	R	F	E	W	F	A	I	L	T	I
Template Known Secondary structure																		S	S	S	T	T	T	T	T																				.	.	.	.	.	.	.	T	T	S	S					S		S	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.								.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		A	P	V	A	V	I	L	V	A	E	N	L	G	H	L	K	A	V	A	G	M	.	.	T	G	R	N	M	D	P	Y	M	G	R	A	F	V	G	D	G	L	A	T	M	L	S	G	S	V	G	G	S	G	V	T	T	Y	A	E	N	I	G	V	M	A	V	T	K	V	Y	S	T	L	V	F	V	A	A	A	V
Query Conservation																							.	.
Alig confidence																							.	.
Template Conservation
Template Sequence		L	P	A	A	L	V	V	I	A	E	H	V	G	H	L	V	V	T	A	N	I	V	K	K	D	L	L	R	D	P	G	L	H	R	S	M	F	A	N	G	L	S	T	V	I	S	G	F	F	G	S	T	P	N	T	T	Y	G	E	N	I	G	V	M	A	I	T	R	V	Y	S	T	W	V	I	G	G	A	A	I
Template Known Secondary structure		T																						T	S		T																								T																		T	B
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	M	L	L	G	F	S	P	K	F	G	A	L	I	H	T	I	P	A	A	V	I	G	G	A	S	I	V	V	F	G	L	I	A	V	A	G	A	R	I	W	V	Q	N	R	V	D	L	S	Q	N	G	N	L	I	M	V	A	V	T	L	V	L	G	A	G	D	F	A	L	T	L	G	G	F	T	L	G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	A	I	L	L	S	C	V	G	K	L	A	A	A	I	Q	M	I	P	L	P	V	M	G	G	V	S	L	L	L	Y	G	V	I	G	A	S	G	I	R	V	L	I	E	S	K	V	D	Y	N	K	A	Q	N	L	I	L	T	S	V	I	L	I	I	G	V	S	G	A	K	V	N	I	G	A	A	E	L	K	G
Template Known Secondary structure							T										T	T	S																											T	T	S		T	T	S																						S	S	S
Template Predicted Secondary structure
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	T	A	T	F	G	A	I	L	L	N	A	L	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	A	L	A	T	I	V	G	I	G	L	S	L	I	F	K
Template Known Secondary structure																	T
Template Predicted Secondary structure
Template SS confidence
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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