Job Description P75892 Confidence 1.30% Date Thu Jan 5 12:15:42 GMT 2012 Rank 29 Aligned Residues 401 % Identity 10% Template c2jlnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter Resolution 2.85 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.			.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.
Query SS confidence																																												.	.
Query Sequence		Q	L	K	S	T	S	T	E	S	G	V	V	A	P	D	E	R	L	P	F	A	Q	T	A	V	M	G	V	Q	H	A	V	A	M	F	G	A	T	V	L	M	P	.	.	I	L	M	G	L	D	P	N	L	S	I	L	M	S	G	I	G	T	L	L	F	F	F	I	T	G	G	R	V	P	S	Y	L	G	S	S
Query Conservation																																												.	.
Alig confidence																																												.	.																												.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.
Template Sequence		E	A	R	S	L	L	N	P	S	N	A	P	T	R	Y	A	E	R	S	V	G	P	F	S	L	A	A	I	W	F	A	M	A	I	Q	V	A	I	F	I	A	A	G	Q	M	T	S	S	F	Q	V	W	Q	V	I	V	A	I	A	A	G	C	T	I	A	V	I	L	L	F	F	.	.	.	.	.	T	Q	S	A
Template Known Secondary structure					B				S	T	T	S				G	G	G			B															S	T										T	T	T	S																							.	.	.	.	.		T
Template Predicted Secondary structure																																																																									.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.						.	80	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	F	V	G	V	V	I	A	A	T	G	F	N	G	Q	G	I	N	P	N	I	S	I	A	L	G	G	I	I	A	C	G	L	V	Y	T	V	I	G	L	V	V	M	K	I	G	T	R	W	I	E	R	L	M	P	P	V	V	T	G	A	V	V	M	A	I	G	L	N	L	A	P	I	A	V	K	S	V	S
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	I	R	W	G	I	N	F	T	V	A	A	R	M	P	F	G	I	R	G	S	L	I	P	I	T	L	K	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	F	W	F	G	F	Q	T	W	L	G	A	L	A	L	D	E	I	T	R	L	L	T
Template Known Secondary structure													T	T	T	T	S		T	T	T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.																										.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	A	F	D	S	W	M	A	V	M	T	V	L	C	I	G	L	V	A	V	F	T	R	G	M	I	Q	R	L	L	I	L	V	G	L	I	V	A	C	L	L	Y	G	V	M	T	N	V	L	G	L	G	K	A	V	D	F	T	L	V	S	H	A	A	W	F	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	F	T	N	L	P	L	W	I	V	I	F	G	A	I	Q	V	V	T	T	F	Y	G	I	T	F	I	R	W	M	N	V	F	A	S	P	V	L	L	A	M	G	V	Y	M	V	Y	L	M	L	D	G	A	D	V	S	L	G	E	V	M	S	M	G	G	E	N	P	G	M	P	F	S	T	A	I	M	I	F	V
Template Known Secondary structure																						T	T																																T							T	T				S	S			S
Template Predicted Secondary structure
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
																			235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	P	H	F	S	T	P	A	F	N	G	Q	A	M	M	L	I	A	P	V	A	V	I	L	V	A	E	N	L	G	H	L	K	A	V	A	G	M	T	G	R	N	M	D	P	Y	M	G	R	A	F	V	G	D	G	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	W	I	A	V	V	V	S	I	H	D	I	V	K	E	C	K	V	D	P	N	A	S	R	E	G	Q	T	K	A	D	A	R	Y	A	T	A	Q	W	L	G	M	V	P	A	S	I	I	F	G	F	I	G	A	A	S	M	V	L	V	G	E	W	N	P	V	I	A	I	T	E	V	V	G	G	V	S	I	P
Template Known Secondary structure		T	T	T					T	T	T					T	T	B				T	T																																								S		S											T
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
									291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	L	A	T	M	L	S	G	S	V	G	G	S	G	V	T	T	Y	A	E	N	I	G	V	M	A	V	T	K	V	Y	S	T	L	V	F	V	A	A	A	V	I	A	M	L	L	G	F	S	P	K	F	G	A	L	I	H	T	I	P	A	A	V	I	G	G	A	S	I	V	V	F	G	L
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																											.	.
Template Conservation																																																																			.	.
Template Sequence		M	A	I	L	F	Q	V	F	V	L	L	A	T	W	S	T	N	P	A	A	N	L	L	S	P	A	Y	T	L	C	S	T	F	P	R	V	F	T	F	K	T	G	V	I	V	S	A	V	V	G	L	L	M	M	P	W	Q	F	A	G	V	L	N	T	F	.	.	L	N	L	L	A	S	A	L	G	P	L	A	G
Template Known Secondary structure																T	T						T											S	T	T	T																	T		G	G	G	T								.	.							T	T
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.			.	.	.	.	.	.	.	370	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.												.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	V	A	G	A	R	I	W	V	Q	N	R	V	D	L	S	Q	N	G	N	L	.	.	.	.	.	.	.	.	.	.	.	I	M	V	A	V	T	L	V	L	G	A	G	D	F	A	L	T	L	G	G	F	T	L	G	G	I	G	T	A	T	F	G	A	I	L	L	N	A	L	L	S	R	K	L	V	D	V
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	M	I	S	D	Y	F	L	V	R	R	R	R	I	S	L	H	D	L	Y	R	T	K	G	I	Y	T	Y	W	R	G	V	N	W	V	A	L	A	V	Y	A	V	A	L	A	V	S	F	L	T	P	D	L	M	F	V	T	G	L	I	A	A	L	L	L	H	I	P	A	M	R	W	V	A	K	T	F	P	L	F
Template Known Secondary structure									T	T	S	T	T								T	B	S	S	S	T	T		T	B	T	T	B																	T		G	G	G																					T	T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		433	.	.	.	.	.	.	440	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	P	E	V	V	H	Q	E	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	A	E	S	R	N	E	D	Y
Template Known Secondary structure			G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		456	.	.	.	460	.	.	.	.	.