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Job DescriptionP39333
Confidence100.00%DateThu Jan 5 11:59:24 GMT 2012
Rank144Aligned Residues209
% Identity22%Templatec3rkrC_
PDB info PDB header:oxidoreductaseChain: C: PDB Molecule:short chain oxidoreductase; PDBTitle: crystal structure of a metagenomic short-chain oxidoreductase (sdr) in2 complex with nadp
Resolution2.42 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.... .....60.........70........
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Query Sequence  AFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAKRLAQETGAT. . . . AVFTDSADRDAVIDVVRKSGALDI
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Template Sequence  SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHG
Template Known Secondary structure  TTTT
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SSTT
SSGGGGTT



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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   7980.........90.........100.........110.........120.. .......130.........140.........150..
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Query Sequence  LVVNAGIGVFGEALELNADDIDRLFKINIHAPYHASVEAARQMP. . . . . . EGGRILIIGSVNGDRMPVAGMAAYAASKSA
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Template Sequence  RCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWG
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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   153......160.........170.........180.........190.........200.........210.........220.........230
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Query Sequence  LQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSLMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHT
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Template Sequence  LNGLMTSAAEELRQHQVRVSLVAPGSVRAL. . . . . . . . . . . . . . . . . . . GAIEPDDIADVVALLATQADQSFISEVLV
Template Known Secondary structure  GGGT






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   163......170.........180.........190.. .......200.........210.........220.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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