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Job DescriptionP39333
Confidence100.00%DateThu Jan 5 11:59:24 GMT 2012
Rank101Aligned Residues232
% Identity25%Templatec2ekqB_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:2-deoxy-d-gluconate 3-dehydrogenase; PDBTitle: structure of tt0495 protein from thermus thermophilus
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20.........30.........40.........50.........60.........70.........80.....
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Query Sequence  GKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAKRLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGI
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Template Sequence  ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGAVPLPTDLEKDDPKGLVKRALEALGGLHVLVHAAAVN
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TTTSTT
SS
T


TTTS
TS






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   2.......10.........20.........30.........40.........50.........60.........70.........80.
 
   86...90.........100.........110.........120.........130......... 140.........150.........160...
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Query Sequence  GVFGEALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMP. . VAGMAAYAASKSALQGMARGLARD
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Template Sequence  VRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRALAKE
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TTT

TT


GGGTS

TTS

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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   164.....170.........180..... ....190.........200.........210.........220.........230.......
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Query Sequence  FGPRGITINVVQPGPIDTDANP. . . ANGPMRDMLHSLMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
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Template Sequence  WARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARIPMGRWARPEEIARVAAVLCGDEAEYLTGQAVAVDGGFLA
Template Known Secondary structure  GGGT
SB
SGGGT
TT
TTSS
B
TSGGGTT

S
STTTTT
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   162.......170.........180.........190.........200.........210.........220.........230........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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