|   |
153 | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | |
|
|
|
|
. | 220 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
| . | . | . | . | . |
|
|  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | R | V | W | I | F | T | T | G | D | A | T | A | E | E | R | P | L | A | V | L | L | D | G | E | F | W | A | Q | S | M | P | V | W | P | V | L | T | S | L | T | H | R | Q | Q | L | P | P | A | V | Y | V | L | I | D | A | I | D | T | T | H | R | A | H | E | L | . |
. |
. |
. |
. |
P | C | N | A | D | F | W | L | A |
Query Conservation |   |
|   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |
|
|
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |
|   |   |   |
|   |
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |   |   | . | . | . | . | . |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   | . | . | . | . |   |   |
|   |
|
|   |
|
|
|   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |
|
|   |   |
| . | . | . | . |   |   |
|
|   |   |
|   |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
L | S | V | L | A | R | I | P | E | A | . |
. |
. |
. |
P | K | A | L | L | L | A | L | H | G | L | Q | G | S | K | E | H | . |
I | L | A | L | L | P | G | Y | A | E | R | G | . |
. |
. |
. |
F | L | L | L | A | F | D | A | P | R | H | G | E | R | E | G | P | P | P | S | S | K | S | P | R | Y | V | E | E | V | Y | R |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  | S | S | . | . | . | . |
|
|  |  |  |  |  |  |
|
| T | T |
|
|  |  |  | . |  |  |  | T | S | T | T | T | G | G | G | T | . | . | . | . |  |  |  |  |  |
|
|
| T | T | S | T | T | S | S |
|
|
|
|
| T | T | S | T | T |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
| . | . | . | . |
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  | . |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
13 | . | . | . | . | . | . | 20 | . | . | |
|
|
|
. | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | |
40 | . | . | . | . | . | . | . | . | . | 50 | . | |
|
|
|
. | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
  |
  |   |
228 | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | |
|
. | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | |
|
|
|
|
|
. | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . |
|  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
Query Sequence |   |
V | Q | Q | E | L | L | P | L | V | K | A | I | A | P | F | S | D | . |
. |
R | A | D | R | T | V | V | A | G | Q | S | F | G | G | L | S | A | L | Y | A | G | L | H | W | P | E | R | F | G | C | V | L | S | Q | S | G | S | Y | W | W | P | H | R | G | G | Q | Q | . |
. |
. |
. |
. |
. |
E | G | V | L | L | E | K | L |
Query Conservation |   |
|   |   |
|
|   |
|   |
|   |   |   |   |   |   |   |   | . | . |
|   |   |   |   |   |
|   |
|   |
|   |
|
|   |   |
|   |   |   |
|
|   |   |
|
|   |
|   |   |
|   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
V | A | L | G | F | K | E | E | A | R | R | V | A | E | E | A | E | R | R | F | G | L | P | L | F | L | A | G | G | S | L | G | A | F | V | A | H | L | L | L | A | E | G | F | R | P | R | G | V | L | A | F | I | G | S | G | F | P | X | K | L | P | Q | G | Q | V | V | E | D | P | G | V | L | A | L | Y | Q | A | P | P |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
| S |
|  |  |  |  | S |
|
| S | S |
|
|
|
|
| T | T |
|
|
|
|
|  |  |  |  |  |  |  |  | S |
| G |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . |
  |
  |   |
300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | |
. | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | |
|
. | 340 | . | . | . | . | . | . | . | |
. | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . |
|  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | A | G | E | V | S | A | E | G | L | R | I | V | L | E | A | G | I | R | E | P | M | I | . |
M | R | A | N | Q | A | L | Y | A | Q | L | H | P | I | K | E | . |
. |
S | I | F | W | R | Q | V | D | G | . |
G | H | D | A | L | C | W | R | G | G | L | M | Q | G | L | I | D | L |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |   | . |   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   | . | . |   |
|   |   |   |   |   |   |
| . |
|
|
|   |   |   |
|
|   |   |
|   |
|   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   | . | . |   |   |   |   |   |   |   |   |   |
|
|
Template Sequence |   |
A | T | R | G | E | A | Y | G | G | V | P | L | L | H | L | H | G | S | R | D | H | I | V | P | L | A | R | X | E | K | T | L | E | A | L | R | P | H | Y | P | E | G | R | L | A | R | F | V | E | E | G | A | G | H | T | L | T | . |
. |
P | L | X | A | R | V | G | L | A | F | L |
Template Known Secondary structure |   |
G | G |
| G | G | G | G | T | T |
|
|  |  |  |  |  |  | T | T |
| T | T | T | T |  |  |  |  |  |  |  |  |  |  |  | G | G | G |
| T | T |
|
|  |  |  |  |  |  | T | T |
|
| S | S |
|
| . | . |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
| . | . |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
164 | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | |
|
. | . | . | . | . | . | . | . | . | 230 | . |
  |