Job Description P13039 Confidence 99.72% Date Thu Jan 5 11:33:32 GMT 2012 Rank 72 Aligned Residues 215 % Identity 13% Template c3mveB_ PDB info PDB header:lyase Chain: B: PDB Molecule:upf0255 protein vv1_0328; PDBTitle: crystal structure of a novel pyruvate decarboxylase Resolution 2.20 Å

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		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	P	A	K	E	I	I	W	K	S	E	R	L	K	K	S	R	R	V	W	I	F	T	T	G	D	A	T	A	E	E	R	P	L	A	V	L	L	D	G	E	F	W	A	Q	S	M	P	V	W	P	V	L	T	S	L	T	H	R	Q	Q	L	P	P	A	V	Y	V	L	I	D	A	I	D	T	T	H	R	A
Query Conservation
Alig confidence														.	.														.	.																																	.	.	.	.
Template Conservation														.	.														.	.																																	.	.	.	.
Template Sequence		K	Y	I	I	K	Q	L	E	I	P	F	E	.	.	K	G	K	I	T	A	H	L	H	L	T	N	T	.	.	D	K	P	H	P	V	V	I	V	S	A	G	L	D	S	L	Q	T	D	M	W	R	L	F	R	D	H	L	A	K	H	D	.	.	.	.	I	A	M	L	T	V	D	M	P	S	V	G	Y	S	S
Template Known Secondary structure		S	S										T	.	.	T										S		S	.	.	S	S											T	T	S		G	G	G							T	T	G	G	G	G	T	.	.	.	.									T	T	S	G	G	G	T
Template Predicted Secondary structure														.	.														.	.																																	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.	.	.	.			190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.					.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	E	L	P	C	N	A	D	F	W	L	A	V	Q	Q	E	L	L	P	L	V	K	A	I	A	P	F	S	D	R	A	D	R	T	V	V	A	G	Q	S	F	G	G	L	S	A	L	Y	A	G	L	H	W	P	E	R	F	G	C	V	L	S	Q	S	G	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.																			.	.																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.																			.	.
Template Sequence		K	Y	P	L	T	E	D	.	.	Y	S	R	L	H	Q	A	V	L	N	E	L	F	S	I	P	Y	V	.	.	D	H	H	R	V	G	L	I	G	F	R	F	G	G	N	A	M	V	R	L	S	F	L	E	Q	E	K	I	K	A	C	V	I	L	G	A	P	I	H	D	I	F	A	S	P	Q	K	L	Q	Q	M
Template Known Secondary structure		T	S				S		.	.	T	T										G	G	G		T	T		.	.											T													T	G	G	G								S				S										T	T	S
Template Predicted Secondary structure									.	.																			.	.
Template SS confidence
		237	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
																			283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	W	P	H	R	G	G	Q	Q	E	G	V	L	L	E	K	L	K	A	G	E	V	S	A	E	G	L	R	I	V	L	E	A	G	I	R	E	P	M	I	M	R	A	N	Q	A	L	Y	A	Q	L	H	P	I	K	E	S	I	F	W	R	Q	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																								.	.	.
Template Conservation																																																																										.	.	.
Template Sequence		P	K	M	Y	L	D	V	L	A	S	R	L	G	K	S	V	V	D	I	Y	S	L	S	G	Q	M	A	A	W	S	L	K	V	Q	G	F	L	S	S	R	K	T	K	V	P	I	L	A	M	S	L	E	G	D	P	V	S	P	Y	S	D	N	Q	M	V	A	F	F	S	T	Y	G	.	.	.	K	A	K	K	I
Template Known Secondary structure													T	T		S											G	G	G	G		T	T	T	T	T	T	T	T	S	S		B	S	S								T	T		S	S	S											T	B	T	T		.	.	.
Template Predicted Secondary structure																																																																										.	.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.				.	.	.	.	.
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	G	H	D	A	L	C	W	R	G	G	L	M	Q	G	L	I	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	S	K	T	I	T	Q	G	Y	E	Q	S	L	D	L	A	I	K	W	L
Template Known Secondary structure			S	S		S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions