Job Description P13039 Confidence 99.86% Date Thu Jan 5 11:33:32 GMT 2012 Rank 42 Aligned Residues 212 % Identity 12% Template c2zshA_ PDB info PDB header:hormone receptor Chain: A: PDB Molecule:probable gibberellin receptor gid1l1; PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.																.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Query Sequence		K	K	S	R	R	V	W	I	F	T	T	G	D	A	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	R	P	L	A	V	L	L	D	G	E	F	W	A	Q	S	M	P	V	W	P	V	L	T	S	L	T	H	R	Q	Q	L	P	.	P	A	V	Y	V	L	I	D	A	I	D	T	T	H
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.										.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		R	I	N	L	L	S	R	V	Y	R	P	A	Y	A	D	Q	E	Q	P	P	S	I	L	D	L	E	K	P	V	D	G	D	I	V	P	V	I	L	F	F	H	G	G	S	F	A	H	S	S	A	N	S	A	I	Y	D	T	L	C	R	R	L	V	G	L	C	K	C	V	V	V	S	V	N	Y	.	.	.	.	.
Template Known Secondary structure		T	T	T											T	T		S	S				T	T	S	T	T					S	S	S										S	T	T	T	S			T	T	B															T	S								.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.				.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure																											.	.																																		.	.	.														.	.	.	.
Query SS confidence																											.	.																																		.	.	.														.	.	.	.
Query Sequence		R	A	H	E	L	P	C	N	A	D	F	W	L	A	V	Q	Q	E	L	L	P	L	V	K	A	.	.	I	A	P	F	S	D	R	A	D	R	T	V	V	A	G	Q	S	F	G	G	L	S	A	L	Y	A	G	L	H	W	P	E	R	.	.	.	F	G	C	V	L	S	Q	S	G	S	Y	W	W	.	.	.	.
Query Conservation																											.	.																																		.	.	.														.	.	.	.
Alig confidence																											.	.																																		.	.	.														.	.	.	.
Template Conservation
Template Sequence		R	R	A	P	E	N	P	Y	P	C	A	Y	D	D	G	W	I	A	L	N	W	V	N	S	R	S	W	L	K	S	K	K	D	S	K	V	H	I	F	L	A	G	D	S	S	G	G	N	I	A	H	N	V	A	L	R	A	G	E	S	G	I	D	V	L	G	N	I	L	L	N	P	M	F	G	G	N	E	R	T
Template Known Secondary structure				T	T	T	S		T	T															T		G	G	G			T	T	T	S	S									T															T	T	T										S						S	S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
																													285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	H	R	G	G	Q	Q	E	G	V	L	L	E	K	L	K	A	G	E	V	S	A	E	G	L	R	I	V	L	E	A	G	I	R	E	P	M	I	M	R	A	N	Q	A	L	Y	A	Q	L	H	P	I	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.
Template Conservation																																																																	.
Template Sequence		E	S	E	K	S	L	D	G	K	Y	F	V	T	V	R	D	R	D	W	Y	W	K	A	F	L	P	E	G	E	D	R	E	H	P	A	C	N	P	F	S	P	R	G	K	S	L	E	G	V	S	F	P	K	S	L	V	V	V	A	G	L	D	L	.	I	R	D	W	Q	L	A	Y	A	E	G	L	K	K	A	G
Template Known Secondary structure								T	T	T	S	S														S		T	T			T	T	S	T	T	T		T	T	S	T	T	S				T	T												T	T	S	T	.	T														T	T
Template Predicted Secondary structure																																																																	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		338	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.						.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure												.							.	.	.	.	.
Query SS confidence												.							.	.	.	.	.
Query Sequence		E	S	I	F	W	R	Q	V	D	G	.	G	H	D	A	L	C	.	.	.	.	.	W	R	G	G	L	M	Q	G	L	I	D	L	W	Q
Query Conservation												.							.	.	.	.	.
Alig confidence												.							.	.	.	.	.
Template Conservation
Template Sequence		Q	E	V	K	L	M	H	L	E	K	A	T	V	G	F	Y	L	L	P	N	N	N	H	F	H	N	V	M	D	E	I	S	A	F	V	N
Template Known Secondary structure										T	T			T	T	T	T	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions