Job Description P13039 Confidence 99.96% Date Thu Jan 5 11:33:32 GMT 2012 Rank 31 Aligned Residues 232 % Identity 12% Template c2xe4A_ PDB info PDB header:hydrolase/inhibitor Chain: A: PDB Molecule:oligopeptidase b; PDBTitle: structure of oligopeptidase b from leishmania major Resolution 1.65 Å

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																			.															.
Query SS confidence																																			.															.
Query Sequence		Q	A	P	E	I	P	A	K	E	I	I	W	K	S	E	R	L	K	K	S	R	R	V	W	I	F	T	T	G	D	A	T	A	.	E	E	R	P	L	A	V	L	L	D	G	E	F	W	.	A	Q	S	M	P	V	W	P	V	L	T	S	L	T	H	R	Q	Q	L	P	P	A	V	Y	V	L	I	D	A	I	D
Query Conservation																																			.															.
Alig confidence																	.																		.															.																		.	.	.	.
Template Conservation																	.																																																			.	.	.	.
Template Sequence		D	A	A	N	Y	K	V	E	R	R	F	A	T	A	P	.	D	Q	T	K	I	P	L	S	V	V	Y	H	K	D	L	D	M	S	Q	P	Q	P	C	M	L	Y	G	Y	G	S	Y	G	L	S	M	D	P	Q	F	S	I	Q	H	L	P	Y	C	D	R	G	.	.	.	.	M	I	F	A	I	A	H	I	R	G
Template Known Secondary structure			G	G	G											T	.	T												T	T	S		T	T	S												T	T									G	G	G					T	T	T	.	.	.	.									T	T
Template Predicted Secondary structure																	.																																																			.	.	.	.
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.		.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.					.	520	.	.	.	.	.	.	.	.
		211	.	.	.	.	.	.	.				.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure										.	.	.																							.																																											.	.	.	.
Query SS confidence										.	.	.																							.																																											.	.	.	.
Query Sequence		T	T	H	R	A	H	E	L	.	.	.	P	C	N	A	D	F	W	L	A	V	Q	Q	E	L	L	P	L	V	K	A	I	A	.	P	F	S	D	R	A	D	R	T	V	V	A	G	Q	S	F	G	G	L	S	A	L	Y	A	G	L	H	W	P	E	R	F	G	C	V	L	S	Q	S	G	S	Y	.	.	.	.
Query Conservation										.	.	.																							.																																											.	.	.	.
Alig confidence										.	.	.																							.																																											.	.	.	.
Template Conservation
Template Sequence		G	S	E	L	G	R	A	W	Y	E	I	G	A	K	Y	L	T	K	R	N	T	F	S	D	F	I	A	A	A	E	F	L	V	N	A	K	L	T	T	P	S	Q	L	A	C	E	G	R	S	A	G	G	L	L	M	G	A	V	L	N	M	R	P	D	L	F	K	V	A	L	A	G	V	P	F	V	D	V	M	T
Template Known Secondary structure		S		T	T		T					T	T	S	S	G	G	G	T																	T	T	S			G	G	G							T														G	G	G		S						S
Template Predicted Secondary structure
Template SS confidence
		529	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.
																		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.				.	340	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.													.																	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.													.																	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	W	P	H	R	G	G	Q	Q	E	G	V	L	L	E	K	L	K	A	G	E	V	S	A	E	G	L	R	.	I	V	L	E	A	G	I	R	E	P	M	I	.	M	R	A	N	Q	A	L	Y	A	Q	L	H	P	I	K	E	.	.	.	S	I	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.													.																	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.													.																	.	.	.
Template Conservation
Template Sequence		T	M	C	D	P	S	I	P	L	T	T	G	E	W	E	E	W	G	N	P	N	E	Y	K	Y	Y	D	Y	M	L	S	Y	S	P	M	D	N	V	R	A	Q	E	Y	P	N	I	M	V	Q	C	G	L	H	D	P	R	V	A	Y	W	E	P	A	K	W	V	S	K	L	R	E	C	K	T	D	N	N	E	I	L
Template Known Secondary structure				T		T	T	S	T	T					T	T	T	T			T	T	S												T	G	G	G			S	S											T	T		S	S	S		T																S
Template Predicted Secondary structure
Template SS confidence
		609	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.
		342	.	.	.	.	.		.	.	350	.	.	.	.	.					.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.									.	.	.	.
Query SS confidence								.									.	.	.	.
Query Sequence		W	R	Q	V	D	G	.	G	H	D	A	L	C	W	R	.	.	.	.	G	G	L	M	Q	G	L	I	D	L	W	Q	P	L
Query Conservation								.									.	.	.	.
Alig confidence								.									.	.	.	.
Template Conservation
Template Sequence		L	N	I	D	M	E	S	G	H	F	S	A	K	D	R	Y	K	F	W	K	E	S	A	I	Q	Q	A	F	V	C	K	H	L
Template Known Secondary structure						T	T			S	S			S	S																			T
Template Predicted Secondary structure
Template SS confidence
		689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions