Job Description P13039 Confidence 100.00% Date Thu Jan 5 11:33:32 GMT 2012 Rank 17 Aligned Residues 335 % Identity 13% Template c2ecfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:dipeptidyl peptidase iv; PDBTitle: crystal structure of dipeptidyl aminopeptidase iv from2 stenotrophomonas maltophilia Resolution 2.80 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		V	T	D	H	H	Q	N	S	Q	P	Q	S	M	Q	R	I	A	G	T	N	V	W	Q	W	T	T	Q	L	N	A	N	W	R	G	S	Y	C	F	I	P	T	E	R	D	D	I	F	S	V	P	S	P	D	R	L	E	L	R	E	G	W	R	.	K	L	L	P	Q	A	I	A	D	P	L	N	L	Q	S	W	K
Query Conservation																																																																.
Alig confidence																																																																.
Template Conservation
Template Sequence		L	T	H	G	N	W	S	V	D	E	L	L	A	V	D	E	K	A	G	L	A	Y	F	R	A	G	I	E	S	A	R	E	S	Q	I	Y	A	V	P	L	Q	G	G	Q	P	Q	R	L	S	K	A	P	G	M	H	S	A	S	F	A	R	N	A	S	V	Y	V	D	S	W	S	N	N	S	T	P	P	Q	I	E
Template Known Secondary structure		S			S	S	S										T	T	T	T								S	S		T	T		B							T	T										S		S								T	T	S	S									T	T
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																						.	.	.																																						.
Query SS confidence																						.	.	.																																						.
Query Sequence		G	G	R	G	H	A	V	S	A	L	E	M	P	Q	A	P	L	Q	P	G	.	.	.	W	D	C	P	Q	A	P	E	I	P	A	K	E	I	I	W	K	S	E	R	L	K	K	S	R	R	V	W	I	F	T	T	G	D	A	T	A	.	E	E	R	P	L	A	V	L	L	D	G	E	F	W	A	Q	S	M	P
Query Conservation																						.	.	.																																						.
Alig confidence																						.	.	.																																						.
Template Conservation
Template Sequence		L	F	R	A	N	G	E	K	I	A	T	L	V	E	N	D	L	A	D	P	K	H	P	Y	A	R	Y	R	E	A	Q	R	P	V	E	F	G	T	L	T	A	A	D	G	K	T	P	L	N	Y	S	V	I	K	P	A	G	F	D	P	A	K	R	Y	P	V	A	V	Y	V	Y	G	G	P	A	S	Q	T	V	T
Template Known Secondary structure					T	T	S						S	S				S	S	S	T	T	S	T	T					T	T												T	T	S	S											S	S			T	T	S											S	T	T			S		S
Template Predicted Secondary structure
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
									185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																																			.	.																					.
Query SS confidence		.	.	.	.	.	.	.																																			.	.																					.
Query Sequence		.	.	.	.	.	.	.	V	W	P	V	L	T	S	L	T	H	R	Q	Q	L	P	P	A	V	Y	V	L	I	D	A	I	D	T	T	H	R	A	H	E	L	.	.	P	C	N	A	D	F	W	L	A	V	Q	Q	E	L	L	P	L	V	K	A	.	I	A	P	F	S	D	R	A	D	R	T	V	V	A	G	Q
Query Conservation		.	.	.	.	.	.	.																																			.	.																					.
Alig confidence		.	.	.	.	.	.	.													.	.	.	.																			.	.																					.
Template Conservation																					.	.	.	.
Template Sequence		D	S	W	P	G	R	G	D	H	L	F	N	Q	Y	L	A	Q	Q	G	.	.	.	.	Y	V	V	F	S	L	D	N	R	G	T	P	R	R	G	R	D	F	G	G	A	L	Y	G	K	Q	G	T	V	E	V	A	D	Q	L	R	G	V	A	W	L	K	Q	Q	P	W	V	D	P	A	R	I	G	V	Q	G	W
Template Known Secondary structure		S					S												T	T	.	.	.	.									T	T		S	S	S							T	T	T	T		T	T	T															T	S	T	T
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.					.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.												.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.																																			.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.																																			.
Query Sequence		S	F	G	G	L	S	A	L	Y	A	G	L	H	W	P	E	R	F	G	C	V	L	S	Q	S	G	S	Y	W	W	P	H	R	G	.	.	.	.	.	.	.	.	.	.	.	G	Q	Q	E	G	V	L	L	E	K	L	K	A	G	E	V	S	A	E	G	L	R	I	V	L	E	A	G	I	R	E	P	M	I	.
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.																																			.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.																																			.
Template Conservation
Template Sequence		S	N	G	G	Y	M	T	L	M	L	L	A	K	A	S	D	S	Y	A	C	G	V	A	G	A	P	V	T	D	W	G	L	Y	D	S	H	Y	T	E	R	Y	M	D	L	P	A	R	N	D	A	G	Y	R	E	A	R	V	L	T	H	I	E	G	L	R	S	P	L	L	L	I	H	G	M	A	D	D	N	V	L
Template Known Secondary structure		T														T	T	T		S						S					G	G	G	S	B											T	G	G	G									S	G	G	G	G	G	G			S								T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350						.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.				.	.	.	.	.
Query SS confidence																											.				.	.	.	.	.
Query Sequence		M	R	A	N	Q	A	L	Y	A	Q	L	H	P	I	K	E	S	I	F	W	R	Q	V	D	G	.	G	H	D	.	.	.	.	.	A	L	C	W	R	G	G	L	M	Q	G	L	I	D	L	W	Q	P
Query Conservation																											.				.	.	.	.	.
Alig confidence																											.				.	.	.	.	.
Template Conservation
Template Sequence		F	T	N	S	T	S	L	M	S	A	L	Q	K	R	G	Q	P	F	E	L	M	T	Y	P	G	A	K	H	G	L	S	G	A	D	A	L	H	R	Y	R	V	A	E	A	F	L	G	R	C	L	K	P
Template Known Secondary structure		T													T	T									T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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