Job Description P13039 Confidence 99.96% Date Thu Jan 5 11:33:32 GMT 2012 Rank 30 Aligned Residues 229 % Identity 13% Template c2bklB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:prolyl endopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl2 endopeptidases: role of inter-domain dynamics in3 catalysis and specificity Resolution 1.5 Å

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		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																																			.															.
Query SS confidence																																			.															.
Query Sequence		Q	A	P	E	I	P	A	K	E	I	I	W	K	S	E	R	L	K	K	S	R	R	V	W	I	F	T	T	G	D	A	T	A	.	E	E	R	P	L	A	V	L	L	D	G	E	F	W	.	A	Q	S	M	P	V	W	P	V	L	T	S	L	T	H	R	Q	Q	L	P	P	A	V	Y	V	L	I	D	A	I	D
Query Conservation																																			.															.
Alig confidence																	.																		.															.																		.	.	.	.
Template Conservation																	.																																																			.	.	.	.
Template Sequence		N	P	E	Q	Y	Q	V	E	Q	V	F	Y	A	S	K	.	D	G	T	K	V	P	M	F	V	V	H	R	K	D	L	K	R	D	G	N	A	P	T	L	L	Y	G	Y	G	G	F	N	V	N	M	E	A	N	F	R	S	S	I	L	P	W	L	D	A	G	.	.	.	.	G	V	Y	A	V	A	N	L	R	G
Template Known Secondary structure			G	G	G											T	.	T	S											T	T				S	S												T	T									G	G	G						T	T	.	.	.	.									T	T
Template Predicted Secondary structure																	.																																																			.	.	.	.
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.		.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.					.	.	.	.	480	.	.	.	.	.
		211	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure										.	.																							.																																													.	.	.
Query SS confidence										.	.																							.																																													.	.	.
Query Sequence		T	T	H	R	A	H	E	L	.	.	P	C	N	A	D	F	W	L	A	V	Q	Q	E	L	L	P	L	V	K	A	I	A	.	P	F	S	D	R	A	D	R	T	V	V	A	G	Q	S	F	G	G	L	S	A	L	Y	A	G	L	H	W	P	E	R	F	G	C	V	L	S	Q	S	G	S	Y	W	W	.	.	.
Query Conservation										.	.																							.																																													.	.	.
Alig confidence										.	.																							.																																													.	.	.
Template Conservation
Template Sequence		G	G	E	Y	G	K	A	W	H	D	A	G	R	L	D	K	K	Q	N	V	F	D	D	F	H	A	A	A	E	Y	L	V	Q	Q	K	Y	T	Q	P	K	R	L	A	I	Y	G	G	S	N	G	G	L	L	V	G	A	A	M	T	Q	R	P	E	L	Y	G	A	V	V	C	A	V	P	L	L	D	M	V	R	Y
Template Known Secondary structure		S	S	T	T							T	T	S	G	G	G	T																	T	T	S			G	G	G							T														G	G	G		S						S					T	T	T	G
Template Predicted Secondary structure
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.
																285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.				340	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.														.																		.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.														.																		.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	H	R	G	G	Q	Q	E	G	V	L	L	E	K	L	K	A	G	E	V	S	A	E	G	L	.	.	R	I	V	L	E	A	G	I	R	E	P	M	I	.	M	R	A	N	Q	A	L	Y	A	Q	L	H	P	I	K	E	S	.	.	.	I	F	W	R	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.														.																		.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.														.																		.	.	.
Template Conservation
Template Sequence		H	L	F	G	S	G	R	T	W	I	P	E	Y	G	T	A	E	K	P	E	D	F	K	T	L	H	A	Y	S	P	Y	H	H	V	R	P	D	V	R	Y	P	A	L	L	M	M	A	A	D	H	D	D	R	V	D	P	M	H	A	R	K	F	V	A	A	V	Q	N	S	P	G	N	P	A	T	A	L	L	R	I
Template Known Secondary structure		G	G	S	T	T	G	G	G	G							T	T	S												G	G	G				S	S												T	T		S	S	S		T												T	S	T	T			S
Template Predicted Secondary structure
Template SS confidence
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.
		345	.	.		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		V	D	G	.	G	H	D	A	L	C	W	R	G	G	L	M	Q	G	L	I	D	L	W
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		E	A	N	A	G	H	G	G	A	D	Q	V	A	K	A	I	E	S	S	V	D	L	Y
Template Known Secondary structure			T	T		B	T	T	B		S
Template Predicted Secondary structure
Template SS confidence
		646	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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