Job Description P13039 Confidence 99.94% Date Thu Jan 5 11:33:32 GMT 2012 Rank 33 Aligned Residues 258 % Identity 11% Template c1yr2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:prolyl oligopeptidase; PDBTitle: structural and mechanistic analysis of two prolyl endopeptidases: role2 of inter-domain dynamics in catalysis and specificity Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	L	N	L	Q	S	W	K	G	G	R	G	H	A	V	S	A	L	E	M	P	Q	A	P	L	Q	P	G	W	D	C	P	Q	A	P	E	I	P	A	K	E	I	I	W	K	S	E	R	L	K	K	S	R	R	V	W	I	F	T	T	G	D	A	T	A	E	E	R	P	L	A	V	L	L	D	G	E	F	W
Query Conservation
Alig confidence																														.	.	.	.	.																.																		.
Template Conservation																														.	.	.	.	.																.																		.
Template Sequence		S	F	T	Q	P	A	T	V	L	A	L	D	P	A	T	A	K	T	T	P	W	E	P	V	H	L	T	F	.	.	.	.	.	D	P	A	D	F	R	V	E	Q	V	F	Y	P	S	K	.	D	G	T	K	V	P	M	F	I	V	R	R	K	D	A	K	G	.	P	L	P	T	L	L	Y	G	Y	G	G	F	N
Template Known Secondary structure			T	T										T	T	T	T						S					S	S	.	.	.	.	.		G	G	G											T	.	T	S											T	T			S	.												T	T
Template Predicted Secondary structure																														.	.	.	.	.																.																		.
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.						.	.	.	.	.	460	.	.	.	.	.	.	.	.	.		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.		.	.	.	490	.	.	.	.	.	.	.	.	.
			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.																																								.	.																							.
Query SS confidence		.																																								.	.																							.
Query Sequence		.	A	Q	S	M	P	V	W	P	V	L	T	S	L	T	H	R	Q	Q	L	P	P	A	V	Y	V	L	I	D	A	I	D	T	T	H	R	A	H	E	L	.	.	P	C	N	A	D	F	W	L	A	V	Q	Q	E	L	L	P	L	V	K	A	I	A	.	P	F	S	D	R	A	D	R	T	V	V	A	G	Q	S
Query Conservation		.																																								.	.																							.
Alig confidence		.																		.	.	.	.																			.	.																							.
Template Conservation																				.	.	.	.
Template Sequence		V	A	L	T	P	W	F	S	A	G	F	M	T	W	I	D	S	G	.	.	.	.	G	A	F	A	L	A	N	L	R	G	G	G	E	Y	G	D	A	W	H	D	A	G	R	R	D	K	K	Q	N	V	F	D	D	F	I	A	A	G	E	W	L	I	A	N	G	V	T	P	R	H	G	L	A	I	E	G	G	S
Template Known Secondary structure																	T	T	T	.	.	.	.									T	T	S	S	T	T							T	T	S	G	G	G	T																	T	T	S	S		T	T								T
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.					.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.																		.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Query Sequence		F	G	G	L	S	A	L	Y	A	G	L	H	W	P	E	R	F	G	C	V	L	S	Q	S	G	S	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	W	P	H	R	G	G	Q	Q	E	G	V	L	L	E	K	L	K	A	G	E	V	S	A	E	G	L	.	.	R	I	V	L	E	A	G
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.
Template Conservation
Template Sequence		N	G	G	L	L	I	G	A	V	T	N	Q	R	P	D	L	F	A	A	A	S	P	A	V	G	V	M	D	M	L	R	F	D	Q	F	T	A	G	R	Y	W	V	D	D	Y	G	Y	P	E	K	E	A	D	W	R	V	L	R	R	Y	S	P	Y	H	N	V	R	S	G	V	D	Y	P	A	I	L	V	T	T	A
Template Known Secondary structure															G	G	G		S						S					T	T	S	G	G	G	S	T	T	G	G	G	G							T	T	S									T	T		G	G	G				T	T	S
Template Predicted Secondary structure
Template SS confidence
		576	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.
		317	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		I	R	E	P	M	I	.	M	R	A	N	Q	A	L	Y	A	Q	L	H	P	I	K	E	S	I	F	W	R	Q	V	D	G	G	H	D	A	L	C	W	R	G	G	L	M	Q	G	L	I	D	L	W	Q	P	L
Query Conservation								.
Alig confidence								.																																			.
Template Conservation																																											.
Template Sequence		D	T	D	D	R	V	V	P	G	H	S	F	K	Y	T	A	A	L	Q	T	A	A	I	G	P	K	P	H	L	I	R	I	E	P	I	D	K	Q	I	E	E	.	T	A	D	V	Q	A	F	L	A	H	F	T
Template Known Secondary structure		S			S	S	S		T													S				S	S																.
Template Predicted Secondary structure																																											.
Template SS confidence
		656	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.		.	.	.	700	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions