Job Description P13039 Confidence 99.97% Date Thu Jan 5 11:33:32 GMT 2012 Rank 27 Aligned Residues 358 % Identity 14% Template c1xfdD_ PDB info PDB header:membrane protein Chain: D: PDB Molecule:dipeptidyl aminopeptidase-like protein 6; PDBTitle: structure of a human a-type potassium channel accelerating factor2 dppx, a member of the dipeptidyl aminopeptidase family Resolution 3.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.									30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.
Query Sequence		E	V	T	F	W	W	R	D	P	Q	G	S	E	E	Y	S	T	I	K	R	V	W	V	Y	I	T	G	.	.	.	.	.	.	.	.	V	T	D	H	H	Q	N	S	Q	P	Q	S	M	Q	R	I	A	G	T	N	V	W	Q	W	T	T	Q	L	N	A	N	W	R	G	S	Y	C	F	I	P	T	E	R	D	D
Query Conservation																													.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	F	F	F	I	R	A	I	P	Q	G	G	R	G	K	F	Y	H	I	T	V	S	S	S	Q	P	N	S	S	N	D	N	I	Q	S	I	T	S	G	D	W	D	V	T	K	I	L	A	Y	D	E	K	G	N	K	I	Y	F	L	S	T	E	D	L	P	R	R	R	Q	L	Y	S	A	N	T	V	G	N	F	N
Template Known Secondary structure		S										S	S	S	S										S	S			S	S	S					B	S			S	S	S										T	T	T	T							S	S	S		T	T									S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.							.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		I	F	S	V	P	S	P	D	R	L	E	L	R	E	G	W	R	K	L	.	.	.	.	.	.	L	P	Q	A	I	A	D	P	L	N	L	Q	S	W	K	G	G	R	G	H	A	V	S	A	L	E	M	P	Q	A	P	L	Q	P	G	W	D	C	P	Q	A	P	E	I	P	A	K	E	I	I	W	K	S	E	R
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.																														.																								.	.
Template Conservation																																																								.																								.	.
Template Sequence		R	Q	C	L	S	C	D	L	V	E	N	C	T	Y	F	S	A	S	F	S	H	S	M	D	F	F	L	L	K	C	E	G	P	G	V	P	M	V	T	V	H	N	T	T	D	K	K	K	M	F	D	L	E	T	.	N	E	H	V	K	K	A	I	N	D	R	Q	M	P	K	V	E	Y	R	D	I	E	I	.	.
Template Known Secondary structure			B		S	S	T	T	S	S	S	S										T	T	S	S								S	S	S	S								T	T	T										.										T	S				B			B						.	.
Template Predicted Secondary structure																																																								.																								.	.
Template SS confidence
		525	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.		.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.			.	220	.
Predicted Secondary structure																			.																.	.	.	.																																							.	.
Query SS confidence																			.																.	.	.	.																																							.	.
Query Sequence		L	K	K	S	R	R	V	W	I	F	T	T	G	D	A	T	A	.	E	E	R	P	L	A	V	L	L	D	G	E	F	W	A	.	.	.	.	Q	S	M	P	V	W	P	V	L	T	S	L	T	H	R	Q	Q	L	P	P	A	V	Y	V	L	I	D	A	I	D	T	T	H	R	A	H	E	L	.	.	P	C	N
Query Conservation																			.																.	.	.	.																																							.	.
Alig confidence																			.																.	.	.	.																	.	.	.	.																			.	.
Template Conservation																																																							.	.	.	.
Template Sequence		D	D	Y	N	L	P	M	Q	I	L	K	P	A	T	F	T	D	T	T	H	Y	P	L	L	L	V	V	D	G	T	P	G	S	Q	S	V	A	E	K	F	E	V	S	W	E	T	V	M	V	S	S	H	G	.	.	.	.	A	V	V	V	K	C	D	G	R	G	S	G	F	Q	G	T	K	L	L	H	E	V	R
Template Known Secondary structure		T	T						B			B		S	S			S	S	S												T	T											S								T	T		.	.	.	.									T	T		S	S	S							T	T	T
Template Predicted Secondary structure																																																							.	.	.	.
Template SS confidence
		602	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.					.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.					.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure																								.																									.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.																									.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	F	W	L	A	V	Q	Q	E	L	L	P	L	V	K	A	I	A	P	F	S	.	D	R	A	D	R	T	V	V	A	G	Q	S	F	G	G	L	S	A	L	Y	A	G	L	H	.	.	.	.	W	P	E	R	F	G	C	V	L	S	Q	S	G	S	Y	W	W	P	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.																									.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.																									.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	R	L	G	L	L	E	E	K	D	Q	M	E	A	V	R	T	M	L	K	E	Q	Y	I	D	R	T	R	V	A	V	F	G	K	D	Y	G	G	Y	L	S	T	Y	I	L	P	A	K	G	E	N	Q	G	Q	T	F	T	C	G	S	A	L	S	P	I	T	D	F	K	L	Y	A	S	A	F	S	E	R	Y	L
Template Known Secondary structure		T		T	T	T															S	S	S	S												T													S	S	S	T	T					S						S					T	T	S	S	B
Template Predicted Secondary structure
Template SS confidence
		678	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.		.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.			.	.	.	.	.	360
Predicted Secondary structure																									.															.																										.								.	.
Query SS confidence																									.															.																										.								.	.
Query Sequence		H	R	G	G	Q	Q	E	G	V	L	L	E	K	L	K	A	G	E	V	S	A	E	G	.	L	R	I	V	L	E	A	G	I	R	E	P	M	I	.	M	R	A	N	Q	A	L	Y	A	Q	L	H	P	I	K	E	S	I	F	W	R	Q	V	D	G	.	G	H	D	A	L	C	W	.	.	R	G	G	L	M	Q
Query Conservation																									.															.																										.								.	.
Alig confidence																									.															.																										.								.	.
Template Conservation
Template Sequence		G	L	H	G	L	D	N	R	A	Y	E	M	T	K	V	A	H	R	V	S	A	L	E	E	Q	Q	F	L	I	I	H	P	T	A	D	E	K	I	H	F	Q	H	T	A	E	L	I	T	Q	L	I	R	G	K	A	N	Y	S	L	Q	I	Y	P	D	E	S	H	Y	F	T	S	S	S	L	K	Q	H	L	Y	R
Template Known Secondary structure					S	S			S	S	T	T	T	S		T					T	S			S									T	T		S	S	S															T	T									T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		758	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.
		361	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	I	D	L	W	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	I	I	N	F	F	V
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		838	.	840	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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