Job Description P37902 Confidence 35.29% Date Thu Jan 5 11:57:43 GMT 2012 Rank 82 Aligned Residues 197 % Identity 13% Template c3r6uA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:choline-binding protein; PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis Resolution 1.61 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		71	.	.	.	.	.	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.																										.	.	120	.	.
Predicted Secondary structure														.												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	A	I	V	E	A	V	K	K	K	L	N	.	K	P	D	L	Q	V	K	L	I	P	I	.	.	T	S	Q	N	R	I	P	L	L	Q	N	G	T	F	D	F	E	C	G	S	T	T	N	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	E	R	Q	K
Query Conservation														.												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.												.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	I	I	A	S	M	L	G	Q	L	I	E	H	H	T	D	L	K	T	T	T	I	K	N	L	G	S	N	A	V	Q	Q	Q	A	L	M	N	G	E	I	D	I	A	A	T	R	Y	T	G	D	A	L	T	G	T	L	R	M	E	P	E	K	D	P	D	K	A	L	A	L	T	Q	R	E	F	K	K	R	Y	D
Template Known Secondary structure																S	S											S										T	T	S		S														T	T							S
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.					.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure																							.	.	.	.																										.	.	.	.	.	.
Query SS confidence																							.	.	.	.																										.	.	.	.	.	.
Query Sequence		Q	A	A	F	S	D	T	I	F	V	V	G	T	R	L	L	T	K	K	G	G	.	.	.	.	D	I	K	D	F	A	N	L	K	D	K	A	V	V	V	T	S	G	T	T	S	E	V	L	L	.	.	.	.	.	.	N	K	L	N	E	E	Q	K	M	N	M	R	I	I	S	A	K	D	H	G	D	S	F	R
Query Conservation																							.	.	.	.																										.	.	.	.	.	.
Alig confidence																							.	.	.	.																										.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	W	Y	D	S	Y	G	F	D	N	T	Y	A	F	T	V	S	K	E	L	A	D	Q	Y	H	L	E	T	V	S	D	V	K	K	W	A	P	Q	L	K	L	G	V	D	N	Y	W	M	K	L	K	G	N	G	Y	Q	D	F	T	K	T	Y	G	M	T	F	G	G	T	Y	P	M	Q	I	G	L	V	Y	D
Template Known Secondary structure									S		B																T			B	S	G	G	G	G	G	G	G	G	G							T	T	G	G	G		S	S	S	S													S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240					.	.	.	.	.	.	.	.	.	250	.													.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	L	E	S	G	R	A	V	A	F	M	M	D	D	A	L	L	A	G	E	R	A	K	A	K	K	P	D	N	W	E	I	V	G	K	P	Q	S	Q	E	A	Y	G	C	M	L	R	K	.	.	.	.	D	D	P	Q	F	K	K	L	M	D	D	.	.	.	.	.	.	.	.	.	.	.	.	T	I	A	Q	V
Query Conservation																																																		.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.																						.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.
Template Sequence		A	V	K	S	G	K	M	D	I	V	L	A	Y	S	T	D	G	R	I	K	S	Y	G	L	.	.	.	K	M	L	K	D	D	K	Q	F	F	P	P	Y	D	C	S	P	V	V	P	E	K	V	L	K	E	H	P	E	L	E	G	I	I	K	K	M	L	G	K	I	D	T	A	T	M	Q	E	L	N	Y	E	V
Template Known Secondary structure						T	S		S						T	T							T	T		.	.	.				B		T	T			S				B													S	T	T							T	T	T	T
Template Predicted Secondary structure																										.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		257	.	.	260		.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		Q	T	S	G	.	E	A	E	K	W	F	D	K	W	F
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		D	G	N	L	K	E	P	S	V	V	A	K	E	Y	L
Template Known Secondary structure			T	S
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions