Job Description P37902 Confidence 99.98% Date Thu Jan 5 11:57:43 GMT 2012 Rank 25 Aligned Residues 227 % Identity 12% Template c3mplA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:virulence sensor protein bvgs; PDBTitle: crystal structure of bordetella pertussis bvgs vft2 domain (double2 mutant f375e/q461e) Resolution 2.10 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		A	G	S	T	L	D	K	I	A	K	N	G	V	I	V	V	G	H	R	E	S	S	V	P	F	S	Y	Y	D	N	Q	Q	K	V	V	G	Y	S	Q	D	Y	S	N	A	I	V	E	A	V	K	K	K	L	N	K	P	D	L	Q	V	K	L	I	P	I	T	.	S	Q	N	R	I	P	L	L	Q	N	G	T	F
Query Conservation																																																																				.
Alig confidence																															.	.																				.	.	.	.	.	.	.										.
Template Conservation																															.	.																				.	.	.	.	.	.	.
Template Sequence		S	A	R	E	Q	Q	W	M	A	D	H	P	V	V	K	V	A	V	L	N	L	F	A	P	F	T	L	F	R	.	.	E	Q	F	G	G	I	S	A	A	V	L	Q	L	L	Q	L	R	T	G	.	.	.	.	.	.	.	L	D	F	E	I	I	G	V	D	T	V	E	E	L	I	A	K	L	R	S	G	E	A
Template Known Secondary structure													S								T			T	T	T					.	.					S															.	.	.	.	.	.	.									S												T	S	S
Template Predicted Secondary structure																															.	.																				.	.	.	.	.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.			.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.								.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	E	C	G	S	T	T	N	N	V	E	R	Q	K	Q	A	A	F	S	D	T	I	F	V	V	G	T	R	L	L	T	K	K	G	G	D	I	K	D	F	A	N	L	K	D	K	A	V	V	V	T	S	G	T	T	S	E	V	L	L	N	K	L	N	E	E	Q	K	M	N	M	R	I	I	S	A	K	D	H
Query Conservation
Alig confidence																																																														.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		D	M	A	G	A	L	E	V	N	S	A	R	E	S	F	L	S	F	S	R	P	Y	V	R	N	G	M	V	I	V	T	R	Q	D	P	D	A	P	V	D	A	D	H	L	D	G	R	T	V	A	L	V	R	N	S	A	A	I	P	L	.	.	.	.	L	Q	R	R	Y	P	Q	A	K	V	V	T	A	D	N	P
Template Known Secondary structure		S									G	G	G	T	T	T																				S	S			T	T	T	T			T	T	S						T	T		T					.	.	.	.				S	S	T	T							S	S
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		369	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.					.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	S	F	R	T	L	E	S	G	R	A	V	A	F	M	M	D	D	A	L	L	A	G	E	R	A	K	A	K	K	P	D	N	W	E	I	V	G	K	P	Q	S	Q	E	A	Y	G	C	M	L	R	K	D	D	P	Q	F	K	K	L	M	D	D	T	I	A	Q	V	Q	T	S	G	E	A	E	K	W	F	D
Query Conservation
Alig confidence																																																																							.
Template Conservation																																																																							.
Template Sequence		S	E	A	M	L	M	V	A	N	G	Q	A	D	A	V	V	E	T	Q	I	S	A	S	Y	Y	V	N	R	Y	F	A	G	K	L	R	I	A	S	A	L	D	L	P	P	A	E	I	A	L	A	T	T	R	G	Q	T	E	L	M	S	I	L	N	K	A	L	Y	S	I	.	S	N	D	E	L	A	S	I	I	S
Template Known Secondary structure											T	S		S																		T	T	T									S											T	T														T	S	.
Template Predicted Secondary structure																																																																							.
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.		.	.	.	.	.	.	520	.	.	.
		268	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	W
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		524	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions